Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   HY57_RS05800 Genome accession   NZ_CP008884
Coordinates   1406014..1407072 (+) Length   352 a.a.
NCBI ID   WP_019466246.1    Uniprot ID   A0A075JZ98
Organism   Dyella japonica A8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1401014..1412072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HY57_RS05790 (HY57_05905) - 1402247..1402921 (-) 675 WP_019466244.1 hypothetical protein -
  HY57_RS05795 (HY57_05910) - 1403267..1405762 (-) 2496 WP_026034097.1 penicillin-binding protein 1A -
  HY57_RS05800 (HY57_05915) pilM 1406014..1407072 (+) 1059 WP_019466246.1 pilus assembly protein PilM Machinery gene
  HY57_RS05805 (HY57_05920) - 1407072..1407797 (+) 726 WP_019466247.1 PilN domain-containing protein -
  HY57_RS05810 (HY57_05925) pilO 1407797..1408477 (+) 681 WP_019466248.1 type 4a pilus biogenesis protein PilO -
  HY57_RS05815 (HY57_05930) - 1408474..1409010 (+) 537 WP_019466249.1 pilus assembly protein PilP -
  HY57_RS05820 (HY57_05935) - 1409065..1411215 (+) 2151 WP_019466250.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37901.45 Da        Isoelectric Point: 4.6225

>NTDB_id=125430 HY57_RS05800 WP_019466246.1 1406014..1407072(+) (pilM) [Dyella japonica A8]
MGLFTPKKPPLVGVDISSTAVKLLQLSQAGGRYRVEHYAVEPLPPNAVVEKNIVEVDAVGEAIRRALSRSGSKLKHAAAA
VAGSAVITRVIPMPSELSEDDLEGQIQVEANQYIPYPIEEVSLDYEVLGPVRDNPEMNNVLLAASRTENVDMRVAALDLG
GLSAKVIDVEAFAMENAFAMVADQLNVGRDALVAVVDIGATMTTLSVLRNQRTIYSREQVFGGKQLTDEIMRRYGLSYEE
AGRAKRKGGLPDSYESEALEPFKESLVQQISRLLQFFFAGSEYSKVDQVVLAGGCASIEGIGPMLEQQLGVPCVVANPLA
RMSLSPRVQAQSLAQDAPALMIAVGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=125430 HY57_RS05800 WP_019466246.1 1406014..1407072(+) (pilM) [Dyella japonica A8]
GTGGGGCTTTTCACACCCAAGAAGCCGCCGCTTGTTGGTGTCGACATCAGTTCGACGGCCGTCAAGCTGCTGCAGCTCAG
CCAGGCCGGCGGTCGCTATCGCGTGGAACACTACGCGGTCGAGCCACTGCCCCCCAATGCTGTCGTCGAGAAGAACATCG
TCGAGGTCGACGCCGTGGGCGAGGCCATCCGGCGCGCGTTGTCGCGCTCGGGGTCCAAGCTCAAGCACGCGGCCGCGGCC
GTGGCCGGGTCGGCAGTCATCACTCGCGTCATCCCGATGCCGAGCGAACTGTCCGAGGATGATCTGGAGGGCCAGATTCA
GGTCGAGGCCAACCAGTACATCCCGTACCCGATCGAGGAAGTCAGCCTGGACTACGAAGTGCTCGGTCCGGTGCGCGACA
ACCCCGAAATGAACAACGTCCTGCTCGCTGCCTCGCGCACCGAGAACGTGGACATGCGCGTCGCCGCGCTCGACCTGGGC
GGTCTGTCCGCCAAGGTGATCGACGTCGAGGCGTTCGCGATGGAAAACGCCTTCGCCATGGTGGCGGACCAGCTGAACGT
CGGCCGCGATGCGCTGGTCGCCGTGGTCGACATTGGCGCCACCATGACCACGCTGTCGGTGCTGCGCAACCAGCGCACCA
TCTATTCGCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACCGATGAAATCATGCGCCGCTACGGCCTCTCCTATGAGGAA
GCCGGTCGTGCCAAGCGCAAGGGTGGCCTGCCTGACTCCTACGAAAGCGAAGCCCTTGAGCCCTTCAAGGAGTCGCTGGT
GCAGCAGATCAGCCGCCTGCTCCAGTTCTTCTTCGCGGGCAGCGAATACAGCAAGGTCGACCAGGTTGTGCTGGCCGGCG
GTTGCGCGTCCATCGAAGGCATCGGCCCCATGCTGGAACAGCAGCTCGGCGTGCCTTGCGTGGTGGCCAACCCGCTGGCC
CGCATGTCGCTGTCGCCTCGCGTGCAGGCCCAGTCGCTGGCACAGGACGCCCCCGCCTTGATGATCGCGGTCGGCCTCGC
GCTGAGGAGTTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075JZ98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

53.448

98.864

0.528
  comM Acinetobacter nosocomialis M2

53.161

98.864

0.526
  comM Acinetobacter baylyi ADP1

50.571

99.432

0.503
  pilM Legionella pneumophila strain ERS1305867

43.059

100

0.432

Multiple sequence alignment