Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GZ22_RS11415 Genome accession   NZ_CP008876
Coordinates   2248096..2248593 (+) Length   165 a.a.
NCBI ID   WP_038562622.1    Uniprot ID   -
Organism   Terribacillus goriensis strain MP602     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2243096..2253593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZ22_RS11385 yyaC 2243344..2243937 (-) 594 WP_051748219.1 spore protease YyaC -
  GZ22_RS11390 (GZ22_11800) - 2244024..2245043 (+) 1020 WP_038562611.1 membrane protein -
  GZ22_RS11395 (GZ22_11805) - 2245094..2246014 (+) 921 WP_038562613.1 mechanosensitive ion channel family protein -
  GZ22_RS11400 (GZ22_11810) - 2246007..2246213 (+) 207 WP_038562615.1 DUF951 domain-containing protein -
  GZ22_RS11405 (GZ22_11815) ychF 2246547..2247647 (+) 1101 WP_038562617.1 redox-regulated ATPase YchF -
  GZ22_RS11410 (GZ22_11820) rpsF 2247793..2248083 (+) 291 WP_038562619.1 30S ribosomal protein S6 -
  GZ22_RS11415 (GZ22_11825) ssbA 2248096..2248593 (+) 498 WP_038562622.1 single-stranded DNA-binding protein Machinery gene
  GZ22_RS11420 (GZ22_11830) rpsR 2248614..2248844 (+) 231 WP_038562624.1 30S ribosomal protein S18 -
  GZ22_RS11425 (GZ22_11835) - 2249073..2250503 (+) 1431 WP_038562625.1 MDR family MFS transporter -
  GZ22_RS11430 (GZ22_11840) - 2250532..2251251 (-) 720 WP_038562627.1 NAD-dependent protein deacylase -
  GZ22_RS11435 (GZ22_11845) - 2251734..2252891 (+) 1158 WP_038562629.1 alanine--glyoxylate aminotransferase family protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18322.84 Da        Isoelectric Point: 4.5909

>NTDB_id=125383 GZ22_RS11415 WP_038562622.1 2248096..2248593(+) (ssbA) [Terribacillus goriensis strain MP602]
MLNRVVLVGRLTKDPDLRYTPNGVAVANFTLAVNRPFSNQSGEREADFINCVVWRRPAENLANFMSKGSLVGVDGRVQTR
SFDNQEGNRVYITEIVADSVQFLETKGGSQGGGQGSSGYQNQNSNFNNNNNNNFNSNNNNNRNNDQDPFRDKGEPIDISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=125383 GZ22_RS11415 WP_038562622.1 2248096..2248593(+) (ssbA) [Terribacillus goriensis strain MP602]
ATGTTAAATCGTGTCGTACTTGTCGGCAGATTAACCAAGGATCCGGACCTGCGTTACACACCAAATGGAGTGGCAGTTGC
CAACTTTACCTTAGCAGTAAACCGTCCTTTCTCTAATCAGTCAGGCGAACGTGAGGCAGATTTCATCAACTGTGTTGTAT
GGAGACGTCCAGCTGAAAATCTGGCGAACTTCATGAGCAAAGGAAGTCTGGTTGGCGTAGATGGCCGTGTCCAAACGAGA
AGCTTCGATAATCAAGAGGGTAACCGTGTATATATAACGGAAATTGTTGCGGATAGCGTACAATTCCTCGAGACCAAAGG
TGGCTCTCAAGGAGGCGGACAAGGTTCTTCTGGATACCAAAATCAGAACTCGAACTTCAACAACAACAATAACAATAACT
TCAATAGCAACAACAATAATAATCGAAATAACGACCAAGATCCTTTCCGTGATAAAGGTGAACCGATCGATATTTCTGAT
GATGATCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.571

100

0.685
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.594
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

64.242

0.412
  ssb Glaesserella parasuis strain SC1401

37.288

100

0.4

Multiple sequence alignment