Detailed information NTG0124995

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: CUGBS98_RS00255
• Genome accession: NZ_CP010875
• Coordinates: 37893..38891 (+)
• Length: 332 a.a.
• NCBI ID: WP_000196633.1
• Uniprot ID: Q3K3X8
• Organism: Streptococcus agalactiae strain CU_GBS_98
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 32893..43891

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CUGBS98_RS00240 (CUGBS98_00048)	-	33920..35311 (+)	1392	WP_001079797.1	hypothetical protein	-
CUGBS98_RS00245 (CUGBS98_00049)	purB	35333..36631 (+)	1299	WP_000572890.1	adenylosuccinate lyase	-
CUGBS98_RS00250 (CUGBS98_00050)	comR	36784..37692 (+)	909	WP_000912095.1	XRE family transcriptional regulator	Regulator
CUGBS98_RS00255 (CUGBS98_00051)	ruvB	37893..38891 (+)	999	WP_000196633.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
CUGBS98_RS00260 (CUGBS98_00052)	-	39043..39480 (+)	438	WP_000754818.1	low molecular weight protein-tyrosine-phosphatase	-
CUGBS98_RS00265 (CUGBS98_00053)	-	39487..39867 (+)	381	WP_000787702.1	membrane protein	-
CUGBS98_RS00270 (CUGBS98_00054)	-	39864..41642 (+)	1779	WP_001220907.1	acyltransferase family protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37573.90 Da
• Isoelectric Point: 4.5053

>NTDB_id=124995 CUGBS98_RS00255 WP_000196633.1 37893..38891(+) (ruvB) [Streptococcus agalactiae strain CU_GBS_98]
MTRFLDSDAMGDEELVERTLRPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAGETSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYEENDLTEIIERTADIFEMKITYEAASELARRSRGTPRIANRLLKRVRDYAQIMGDGLID
DNITDKALTMLDVDHEGLDYVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATDK
AYEHLGYQRFDK

Nucleotide

• Length: 999 bp

>NTDB_id=124995 CUGBS98_RS00255 WP_000196633.1 37893..38891(+) (ruvB) [Streptococcus agalactiae strain CU_GBS_98]
ATGACAAGATTTTTAGATAGTGATGCAATGGGTGACGAAGAATTGGTAGAACGTACACTTCGTCCGCAGTATTTAAGAGA
GTATATTGGACAAGATAAGGTTAAAGATCAGCTAAAAATATTTATTGAAGCTGCTAAATTGCGTGATGAGTCATTGGATC
ATGTGTTATTATTTGGCCCTCCTGGTTTAGGGAAAACAACCATGGCATTTGTAATTGCTAATGAGTTGGGTGTCAATCTC
AAACAAACATCAGGTCCCGCAATTGAAAAATCAGGGGATTTAGTAGCCATTTTAAATGATTTAGAACCAGGTGATGTTCT
TTTTATTGATGAAATTCATCGTATGCCGATGGCGGTTGAAGAGGTACTTTATAGTGCAATGGAAGACTTTTATATTGACA
TTATGATCGGTGCAGGAGAAACTAGTAGAAGTGTTCATTTAGATTTGCCGCCCTTTACCTTAATTGGTGCAACGACACGT
GCAGGTATGTTATCTAATCCCTTACGTGCTCGCTTTGGTATTACAGGGCATATGGAGTATTATGAAGAAAACGATTTGAC
AGAAATTATTGAGCGTACAGCAGATATTTTTGAAATGAAAATTACTTATGAAGCTGCTTCTGAATTAGCGCGTCGCAGTC
GTGGAACGCCACGTATCGCTAACCGTTTATTGAAACGTGTTCGAGATTATGCTCAAATCATGGGAGATGGTTTGATAGAT
GACAATATTACAGATAAAGCATTAACGATGTTAGATGTTGATCACGAGGGGCTTGATTACGTCGATCAAAAAATCTTAAG
AACCATGATTGAAATGTATAATGGAGGTCCTGTTGGTTTAGGAACTCTATCCGTTAATATTGCTGAAGAACGAGATACTG
TTGAAGACATGTACGAACCTTATTTAATTCAAAAAGGTTTTATTATGCGTACCCGTACCGGTCGTGTAGCTACGGATAAG
GCATACGAACATTTAGGTTATCAGCGATTTGATAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

3D structure

• AlphaFold DB: Q3K3X8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.06	100	0.901
ruvB	Streptococcus pneumoniae R6	89.759	100	0.898
ruvB	Streptococcus pneumoniae D39	89.759	100	0.898
ruvB	Bacillus subtilis subsp. subtilis str. 168	59.819	99.699	0.596
ruvB	Helicobacter pylori 26695	53.074	93.072	0.494
ruvB	Synechocystis sp. PCC 6803	50.479	94.277	0.476