Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   TO73_RS07020 Genome accession   NZ_CP010822
Coordinates   1314259..1314615 (+) Length   118 a.a.
NCBI ID   WP_003045950.1    Uniprot ID   A0ABN4II88
Organism   Thermus aquaticus Y51MC23     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1309259..1319615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TO73_RS07005 (TO73_1451) - 1309558..1309917 (+) 360 WP_003045945.1 hypothetical protein -
  TO73_RS07010 (TO73_1452) - 1309877..1311619 (+) 1743 WP_003045946.1 DUF294 nucleotidyltransferase-like domain-containing protein -
  TO73_RS13265 (TO73_1453) - 1311616..1311792 (+) 177 WP_003045948.1 hypothetical protein -
  TO73_RS07015 (TO73_1454) - 1311789..1314281 (+) 2493 WP_003045949.1 ATP-binding protein -
  TO73_RS07020 (TO73_1455) spo0A 1314259..1314615 (+) 357 WP_003045950.1 response regulator transcription factor Regulator
  TO73_RS07025 (TO73_1456) - 1314612..1316495 (+) 1884 WP_003045953.1 exonuclease domain-containing protein -
  TO73_RS07030 (TO73_1457) purD 1316485..1317738 (-) 1254 WP_060474011.1 phosphoribosylamine--glycine ligase -
  TO73_RS07035 (TO73_1458) purN 1317735..1318625 (-) 891 WP_003045957.1 phosphoribosylglycinamide formyltransferase -
  TO73_RS07040 (TO73_1459) - 1318626..1319525 (-) 900 WP_040684301.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12941.22 Da        Isoelectric Point: 4.6381

>NTDB_id=124673 TO73_RS07020 WP_003045950.1 1314259..1314615(+) (spo0A) [Thermus aquaticus Y51MC23]
MRILVVDDEESILVPLEFLLKKAGHEVALARTGAEALRLLEEGPFDLLVLDLMLPDLDGFAVLERLPQGRKPRVLVLTAR
GREADRAKALALGAEAFMAKPFGIQDLLAEVQRLSEGL

Nucleotide


Download         Length: 357 bp        

>NTDB_id=124673 TO73_RS07020 WP_003045950.1 1314259..1314615(+) (spo0A) [Thermus aquaticus Y51MC23]
ATGCGGATCCTGGTGGTGGATGACGAGGAGAGCATCCTGGTGCCCCTGGAGTTCCTCCTGAAGAAGGCCGGGCACGAGGT
GGCCCTGGCCAGAACGGGGGCAGAGGCCCTGAGGCTTTTGGAAGAGGGGCCCTTTGACCTCCTGGTCCTGGACCTGATGC
TGCCGGACCTGGACGGCTTCGCCGTCCTGGAGCGGCTACCCCAGGGCAGGAAGCCCCGGGTCCTGGTCCTCACCGCCCGG
GGCCGGGAGGCGGACCGGGCCAAGGCCCTGGCCCTGGGGGCAGAGGCCTTCATGGCCAAGCCCTTCGGCATCCAGGACCT
GCTGGCGGAAGTGCAAAGGCTTTCGGAGGGCTTGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

38.333

100

0.39
  covR Streptococcus salivarius strain HSISS4

39.64

94.068

0.373
  vicR Streptococcus mutans UA159

39.64

94.068

0.373
  micA Streptococcus pneumoniae Cp1015

38.938

95.763

0.373

Multiple sequence alignment