Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   GT95_RS08650 Genome accession   NZ_CP008813
Coordinates   1657467..1658156 (-) Length   229 a.a.
NCBI ID   WP_088881688.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain C001     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1652467..1663156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT95_RS08630 (GT95_08385) dnaI 1653270..1654172 (-) 903 WP_000843624.1 primosomal protein DnaI -
  GT95_RS08635 (GT95_08390) - 1654169..1655344 (-) 1176 WP_000074509.1 DnaD domain protein -
  GT95_RS08640 (GT95_08395) nrdR 1655344..1655823 (-) 480 WP_001203682.1 transcriptional regulator NrdR -
  GT95_RS08645 (GT95_08400) - 1655972..1657477 (-) 1506 WP_000791116.1 HAMP domain-containing histidine kinase -
  GT95_RS08650 (GT95_08405) covR 1657467..1658156 (-) 690 WP_088881688.1 response regulator transcription factor Regulator
  GT95_RS08655 (GT95_08410) - 1658391..1658924 (-) 534 WP_000927540.1 YceD family protein -
  GT95_RS08660 (GT95_08415) htpX 1659029..1659919 (-) 891 WP_000966821.1 zinc metalloprotease HtpX -
  GT95_RS08665 (GT95_08420) - 1659940..1660494 (-) 555 WP_000537056.1 LemA family protein -
  GT95_RS08670 (GT95_08425) rsmG 1660622..1661335 (+) 714 WP_000188792.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  GT95_RS08675 (GT95_08430) - 1661350..1662729 (+) 1380 WP_069107338.1 potassium transporter TrkG -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26520.53 Da        Isoelectric Point: 4.8094

>NTDB_id=124436 GT95_RS08650 WP_088881688.1 1657467..1658156(-) (covR) [Streptococcus agalactiae strain C001]
MGKKILIIEDEKNLARFVSLELLHEGYDVVVETNGREGLDTALEKDFDLILLDLMLPEMDGFEITRRLQAEKTTYIMMMT
ARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFRRQEIETKTKEKGDSGSFRDLSLNTHSRSAMRGDEEISLTKRE
FDLLNVLMTNMNRVMTREELLEHVWKYDVAAETNVVDVYIRYLRGKIDIPGRESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 690 bp        

>NTDB_id=124436 GT95_RS08650 WP_088881688.1 1657467..1658156(-) (covR) [Streptococcus agalactiae strain C001]
ATGGGTAAAAAGATCTTAATAATCGAAGATGAGAAAAATTTAGCTCGCTTCGTCTCGTTAGAACTACTACATGAAGGATA
TGATGTTGTTGTTGAAACAAACGGTCGTGAAGGATTGGACACAGCATTAGAAAAAGATTTTGATTTGATTTTACTGGATT
TAATGCTTCCAGAGATGGATGGTTTCGAAATCACACGTCGCCTGCAGGCTGAAAAAACAACCTATATCATGATGATGACA
GCACGTGATTCTGTTATGGATATTGTAGCTGGTCTTGATCGTGGAGCAGATGATTATATTGTTAAGCCGTTTGCAATCGA
AGAATTATTAGCACGTGTTAGGGCGATTTTCCGACGCCAAGAAATTGAAACGAAGACAAAAGAAAAAGGTGATAGCGGTA
GTTTCCGTGATTTATCATTAAATACTCATAGTCGTTCAGCGATGCGTGGTGATGAGGAAATTTCACTAACAAAACGTGAA
TTTGATTTGTTGAATGTCTTGATGACAAATATGAATCGTGTTATGACACGAGAAGAGTTGCTAGAACATGTTTGGAAATA
CGATGTGGCAGCAGAGACAAACGTTGTTGATGTTTATATCCGTTACCTAAGAGGTAAAATTGATATCCCAGGTCGTGAAT
CATATATTCAAACTGTTCGCGGAATGGGCTATGTGATTCGTGAAAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

79.039

100

0.79
  covR Lactococcus lactis subsp. lactis strain DGCC12653

65.789

99.563

0.655
  vicR Streptococcus mutans UA159

45.887

100

0.463
  micA Streptococcus pneumoniae Cp1015

43.478

100

0.437

Multiple sequence alignment