Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BSUB_RS22045 Genome accession   NZ_CP008698
Coordinates   4176920..4177438 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. subtilis str. AG1839     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4171920..4182438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSUB_RS22015 (BSUB_04338) yyaJ 4172423..4173778 (+) 1356 WP_003243011.1 MFS transporter -
  BSUB_RS22020 (BSUB_04339) maa 4173812..4174366 (-) 555 WP_003242928.1 sugar O-acetyltransferase -
  BSUB_RS22025 (BSUB_04340) yyaH 4174384..4174764 (-) 381 WP_003244460.1 VOC family protein -
  BSUB_RS22030 (BSUB_04341) ccpB 4174820..4175755 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  BSUB_RS22035 (BSUB_04342) xth 4175814..4176572 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  BSUB_RS22040 (BSUB_04343) rpsR 4176637..4176876 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  BSUB_RS22045 (BSUB_04344) ssbA 4176920..4177438 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  BSUB_RS22050 (BSUB_04345) rpsF 4177479..4177766 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  BSUB_RS22055 (BSUB_04346) ychF 4177877..4178977 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  BSUB_RS22060 (BSUB_04347) yyaE 4179104..4181107 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  BSUB_RS22065 (BSUB_04348) yyzM 4181158..4181364 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=123747 BSUB_RS22045 WP_003219228.1 4176920..4177438(-) (ssbA) [Bacillus subtilis subsp. subtilis str. AG1839]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=123747 BSUB_RS22045 WP_003219228.1 4176920..4177438(-) (ssbA) [Bacillus subtilis subsp. subtilis str. AG1839]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment