Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   H733_RS01715 Genome accession   NZ_CP007805
Coordinates   343895..344692 (-) Length   265 a.a.
NCBI ID   WP_038439365.1    Uniprot ID   -
Organism   Haemophilus influenzae CGSHiCZ412602     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338895..349692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H733_RS01680 (H733_0326) nfuA 339396..339992 (-) 597 WP_038439359.1 Fe-S biogenesis protein NfuA -
  H733_RS01685 (H733_0327) - 340068..340754 (-) 687 WP_038439360.1 ComF family protein -
  H733_RS01690 (H733_0328) - 340889..341110 (-) 222 Protein_316 transposase -
  H733_RS01695 (H733_0329) comE 341107..342450 (-) 1344 WP_038439361.1 type IV pilus secretin PilQ family protein Machinery gene
  H733_RS01700 (H733_0330) comD 342460..342873 (-) 414 WP_032823984.1 pilus assembly protein PilP Machinery gene
  H733_RS01705 (H733_0331) comC 342870..343391 (-) 522 WP_005662592.1 competence protein ComC Machinery gene
  H733_RS01710 (H733_0332) comB 343388..343894 (-) 507 WP_038439363.1 competence protein ComB Machinery gene
  H733_RS01715 (H733_0333) comA 343895..344692 (-) 798 WP_038439365.1 pilus assembly protein PilM Machinery gene
  H733_RS01720 (H733_0334) - 344791..347385 (+) 2595 WP_038439366.1 penicillin-binding protein 1A -
  H733_RS01725 (H733_0335) - 347462..348307 (+) 846 WP_038439368.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  H733_RS01730 (H733_0336) - 348460..348789 (+) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  H733_RS01735 (H733_0337) recR 348920..349522 (+) 603 WP_005626527.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31598.00 Da        Isoelectric Point: 6.0249

>NTDB_id=123484 H733_RS01715 WP_038439365.1 343895..344692(-) (comA) [Haemophilus influenzae CGSHiCZ412602]
MQFSLKNYRTLQIGIHRKQSYFDFVWFDDLEQPQSYQIFVNDRYFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRKSTAQTYLQDFQPFKINVLDVASNAVLRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSYTPLLENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=123484 H733_RS01715 WP_038439365.1 343895..344692(-) (comA) [Haemophilus influenzae CGSHiCZ412602]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGAGTTATTTTGATTTTGTGTGGTT
TGATGATCTCGAACAGCCACAAAGTTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTAGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAGAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGCATCAAATGCTGTTTTGCGTGCA
TTTCAATATTTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGATCTCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTTATACGCCATTACTAGAAAATTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCACTTGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

98.113

100

0.981
  comA Haemophilus influenzae 86-028NP

96.604

100

0.966

Multiple sequence alignment