Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   H733_RS01700 Genome accession   NZ_CP007805
Coordinates   342460..342873 (-) Length   137 a.a.
NCBI ID   WP_032823984.1    Uniprot ID   -
Organism   Haemophilus influenzae CGSHiCZ412602     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337460..347873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H733_RS01665 (H733_0323) - 337497..337769 (-) 273 WP_005630954.1 HU family DNA-binding protein -
  H733_RS01670 (H733_0324) - 337909..338499 (-) 591 WP_005662597.1 YjaG family protein -
  H733_RS01675 (H733_0325) nudC 338535..339329 (-) 795 WP_038439358.1 NAD(+) diphosphatase -
  H733_RS01680 (H733_0326) nfuA 339396..339992 (-) 597 WP_038439359.1 Fe-S biogenesis protein NfuA -
  H733_RS01685 (H733_0327) - 340068..340754 (-) 687 WP_038439360.1 ComF family protein -
  H733_RS01690 (H733_0328) - 340889..341110 (-) 222 Protein_316 transposase -
  H733_RS01695 (H733_0329) comE 341107..342450 (-) 1344 WP_038439361.1 type IV pilus secretin PilQ family protein Machinery gene
  H733_RS01700 (H733_0330) comD 342460..342873 (-) 414 WP_032823984.1 pilus assembly protein PilP Machinery gene
  H733_RS01705 (H733_0331) comC 342870..343391 (-) 522 WP_005662592.1 competence protein ComC Machinery gene
  H733_RS01710 (H733_0332) comB 343388..343894 (-) 507 WP_038439363.1 competence protein ComB Machinery gene
  H733_RS01715 (H733_0333) comA 343895..344692 (-) 798 WP_038439365.1 pilus assembly protein PilM Machinery gene
  H733_RS01720 (H733_0334) - 344791..347385 (+) 2595 WP_038439366.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15615.70 Da        Isoelectric Point: 4.4355

>NTDB_id=123481 H733_RS01700 WP_032823984.1 342460..342873(-) (comD) [Haemophilus influenzae CGSHiCZ412602]
MKYWFFLTALLFINCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=123481 H733_RS01700 WP_032823984.1 342460..342873(-) (comD) [Haemophilus influenzae CGSHiCZ412602]
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAAGGTTTGCAAATTTACAGTGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Haemophilus influenzae 86-028NP

96.35

100

0.964
  comD Haemophilus influenzae Rd KW20

95.62

100

0.956

Multiple sequence alignment