Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DK63_RS08270 Genome accession   NZ_CP007763
Coordinates   545567..546073 (-) Length   168 a.a.
NCBI ID   WP_004683827.1    Uniprot ID   Q8YHC2
Organism   Brucella melitensis bv.     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 540567..551073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK63_RS08255 (DK63_538) - 542635..543264 (+) 630 WP_002967687.1 MarC family protein -
  DK63_RS08260 (DK63_539) phnN 543355..543933 (-) 579 WP_004685664.1 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN -
  DK63_RS08265 (DK63_540) phnF 544120..544881 (+) 762 WP_004683825.1 phosphonate metabolism transcriptional regulator PhnF -
  DK63_RS18195 - 545024..545411 (+) 388 Protein_534 hypothetical protein -
  DK63_RS16665 (DK63_542) - 545463..545663 (+) 201 WP_002971429.1 hypothetical protein -
  DK63_RS08270 (DK63_541) ssb 545567..546073 (-) 507 WP_004683827.1 single-stranded DNA-binding protein Machinery gene
  DK63_RS16670 (DK63_543) - 546641..546841 (+) 201 WP_002964232.1 hypothetical protein -
  DK63_RS08275 (DK63_544) uvrA 546972..549896 (+) 2925 WP_004683828.1 excinuclease ABC subunit UvrA -
  DK63_RS08280 (DK63_545) - 550083..550358 (-) 276 WP_002964234.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18401.18 Da        Isoelectric Point: 5.3476

>NTDB_id=123131 DK63_RS08270 WP_004683827.1 545567..546073(-) (ssb) [Brucella melitensis bv.]
MAGSVNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEIVLQKFRGELQMLDSRSEGSEGRSFGGGGNRNQMSDYSGGGGDFGSSGPSSGSSGGFSR
DLDDEIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=123131 DK63_RS08270 WP_004683827.1 545567..546073(-) (ssb) [Brucella melitensis bv.]
ATGGCTGGTAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGTGCAGATCCTGAAATTCGCCGCCTGAATTCCGGCGA
TATGGTTGCCAACCTGCGCATTGCAACCTCGGAAAGCTGGCGTGACCGCCAGACCGGCGAACGCAAGGATCGCACCGAAT
GGCACAGCGTCGTCATCTTCAATGAAAATCTCGCCAAGGTTGCCGAACAATATCTGAAGAAGGGCGCCAAGGTTTATATC
GAAGGCGCGCTCCAGACCCGCAAGTGGCAGGATCAAAACGGCAATGACCGTTATTCAACGGAAATCGTGCTGCAAAAATT
CCGTGGAGAGCTTCAAATGCTCGACAGCCGCAGCGAAGGCAGCGAGGGCCGTTCCTTCGGCGGTGGTGGCAACCGCAACC
AGATGTCGGATTATTCCGGCGGCGGTGGAGATTTCGGCTCATCCGGCCCATCTTCGGGCAGCAGCGGCGGTTTCTCGCGC
GATCTGGACGATGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8YHC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.133

100

0.506
  ssb Glaesserella parasuis strain SC1401

62.016

76.786

0.476
  ssb Neisseria gonorrhoeae MS11

38.333

100

0.411
  ssb Neisseria meningitidis MC58

38.547

100

0.411

Multiple sequence alignment