Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DK60_RS05685 Genome accession   NZ_CP007758
Coordinates   1189258..1189764 (-) Length   168 a.a.
NCBI ID   WP_002967690.1    Uniprot ID   A0A7L9MC56
Organism   Brucella canis strain RM6/66     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1184258..1194764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK60_RS05670 (DK60_1153) - 1186327..1186956 (+) 630 WP_004691788.1 MarC family protein -
  DK60_RS05675 (DK60_1154) phnN 1187047..1187625 (-) 579 WP_004685664.1 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN -
  DK60_RS05680 (DK60_1155) phnF 1187812..1188573 (+) 762 WP_004689719.1 phosphonate metabolism transcriptional regulator PhnF -
  DK60_RS17880 - 1188716..1189102 (+) 387 Protein_1147 hypothetical protein -
  DK60_RS16345 (DK60_1157) - 1189154..1189354 (+) 201 WP_002971429.1 hypothetical protein -
  DK60_RS05685 (DK60_1156) ssb 1189258..1189764 (-) 507 WP_002967690.1 single-stranded DNA-binding protein Machinery gene
  DK60_RS16350 (DK60_1158) - 1190332..1190532 (+) 201 WP_002964232.1 hypothetical protein -
  DK60_RS05690 (DK60_1159) uvrA 1190663..1193587 (+) 2925 WP_004690871.1 excinuclease ABC subunit UvrA -
  DK60_RS05695 (DK60_1160) - 1193773..1194048 (-) 276 WP_002964234.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18371.15 Da        Isoelectric Point: 5.3476

>NTDB_id=123119 DK60_RS05685 WP_002967690.1 1189258..1189764(-) (ssb) [Brucella canis strain RM6/66]
MAGSVNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEIVLQKFRGELQMLDSRSEGGEGRSFGGGGNRNQMSDYSGGGGDFGSSGPSSGSSGGFSR
DLDDEIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=123119 DK60_RS05685 WP_002967690.1 1189258..1189764(-) (ssb) [Brucella canis strain RM6/66]
ATGGCTGGTAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGTGCAGATCCTGAAATTCGCCGCCTGAATTCCGGCGA
TATGGTTGCCAACCTGCGCATTGCAACCTCGGAAAGCTGGCGTGACCGCCAGACCGGCGAACGCAAGGATCGCACCGAAT
GGCACAGCGTCGTCATCTTCAATGAAAATCTCGCCAAGGTTGCCGAACAATATCTGAAGAAGGGCGCCAAGGTTTATATC
GAAGGCGCGCTCCAGACCCGCAAGTGGCAGGATCAAAACGGCAATGACCGTTATTCAACGGAAATCGTGCTGCAAAAATT
CCGTGGAGAGCTTCAAATGCTCGACAGCCGCAGCGAAGGCGGCGAGGGCCGTTCCTTCGGCGGTGGTGGCAACCGCAACC
AGATGTCGGATTATTCCGGCGGCGGTGGAGATTTCGGCTCATCCGGCCCATCTTCGGGCAGCAGCGGCGGTTTCTCGCGC
GATCTGGACGATGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.947

100

0.554
  ssb Vibrio cholerae strain A1552

49.711

100

0.512
  ssb Neisseria meningitidis MC58

38.547

100

0.411
  ssb Neisseria gonorrhoeae MS11

37.778

100

0.405

Multiple sequence alignment