Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EV46_RS04430 | Genome accession | NZ_CP007744 |
| Coordinates | 992695..993243 (+) | Length | 182 a.a. |
| NCBI ID | WP_039290400.1 | Uniprot ID | M4GYR9 |
| Organism | Pectobacterium atrosepticum strain JG10-08 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 987695..998243
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EV46_RS04415 (EV46_04525) | - | 988478..989275 (+) | 798 | WP_039290394.1 | TIGR03761 family integrating conjugative element protein | - |
| EV46_RS04420 (EV46_04530) | - | 989275..991290 (+) | 2016 | WP_039290396.1 | DNA topoisomerase III | - |
| EV46_RS04425 (EV46_04535) | - | 992139..992630 (+) | 492 | WP_011092149.1 | STY4534 family ICE replication protein | - |
| EV46_RS04430 (EV46_04540) | ssb | 992695..993243 (+) | 549 | WP_039290400.1 | single-stranded DNA-binding protein | Machinery gene |
| EV46_RS04435 (EV46_04545) | - | 993330..993767 (+) | 438 | WP_011092150.1 | DUF29 domain-containing protein | - |
| EV46_RS04440 (EV46_04550) | - | 993913..995229 (+) | 1317 | WP_011092151.1 | TcpQ domain-containing protein | - |
| EV46_RS04445 (EV46_04555) | pilM | 995250..995675 (+) | 426 | WP_235434532.1 | type IV pilus biogenesis protein PilM | - |
| EV46_RS04450 (EV46_04560) | - | 995689..997353 (+) | 1665 | WP_039290406.1 | PilN family type IVB pilus formation outer membrane protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 19684.06 Da Isoelectric Point: 8.0013
>NTDB_id=123033 EV46_RS04430 WP_039290400.1 992695..993243(+) (ssb) [Pectobacterium atrosepticum strain JG10-08]
MASRGVNKVILVGHLGQDPEIRYMPNGGAVANMTLATSETWRDKQSGEQKEKTEWHRVVIFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWADQAGVERYTTEVVVNVGGTLQMLGSRPNAGSNNQSAASTAWGKPQQPVAPAQSGPPQSQRSAGNEPPMDF
DDDIPFLGFGYGVCRKAIYAVS
MASRGVNKVILVGHLGQDPEIRYMPNGGAVANMTLATSETWRDKQSGEQKEKTEWHRVVIFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWADQAGVERYTTEVVVNVGGTLQMLGSRPNAGSNNQSAASTAWGKPQQPVAPAQSGPPQSQRSAGNEPPMDF
DDDIPFLGFGYGVCRKAIYAVS
Nucleotide
Download Length: 549 bp
>NTDB_id=123033 EV46_RS04430 WP_039290400.1 992695..993243(+) (ssb) [Pectobacterium atrosepticum strain JG10-08]
ATGGCTTCACGCGGTGTTAACAAAGTTATCTTAGTTGGCCATCTCGGTCAGGATCCTGAAATTCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATGACATTAGCGACCTCTGAAACCTGGCGGGATAAGCAAAGTGGTGAACAGAAAGAGAAGACCG
AATGGCACCGTGTGGTGATTTTCGGGAAACTCGCTGAAGTCGCTGGCGAATATCTTCGCAAAGGCTCTCAGGTTTACATT
GAAGGTTCATTACAAACGCGTAAATGGGCTGATCAGGCTGGGGTAGAACGCTATACGACTGAAGTTGTCGTTAACGTTGG
CGGCACATTGCAGATGCTAGGCTCTCGTCCTAACGCTGGAAGTAACAACCAAAGTGCAGCCAGTACTGCATGGGGAAAAC
CTCAGCAGCCAGTTGCACCGGCGCAGAGTGGTCCCCCTCAGTCTCAACGTTCAGCAGGCAATGAACCGCCGATGGATTTT
GACGATGATATCCCGTTCCTTGGGTTTGGTTATGGCGTATGTCGCAAGGCAATCTACGCCGTTTCGTAA
ATGGCTTCACGCGGTGTTAACAAAGTTATCTTAGTTGGCCATCTCGGTCAGGATCCTGAAATTCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATGACATTAGCGACCTCTGAAACCTGGCGGGATAAGCAAAGTGGTGAACAGAAAGAGAAGACCG
AATGGCACCGTGTGGTGATTTTCGGGAAACTCGCTGAAGTCGCTGGCGAATATCTTCGCAAAGGCTCTCAGGTTTACATT
GAAGGTTCATTACAAACGCGTAAATGGGCTGATCAGGCTGGGGTAGAACGCTATACGACTGAAGTTGTCGTTAACGTTGG
CGGCACATTGCAGATGCTAGGCTCTCGTCCTAACGCTGGAAGTAACAACCAAAGTGCAGCCAGTACTGCATGGGGAAAAC
CTCAGCAGCCAGTTGCACCGGCGCAGAGTGGTCCCCCTCAGTCTCAACGTTCAGCAGGCAATGAACCGCCGATGGATTTT
GACGATGATATCCCGTTCCTTGGGTTTGGTTATGGCGTATGTCGCAAGGCAATCTACGCCGTTTCGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
67.797 |
97.253 |
0.659 |
| ssb | Glaesserella parasuis strain SC1401 |
51.381 |
99.451 |
0.511 |
| ssb | Neisseria meningitidis MC58 |
44.318 |
96.703 |
0.429 |
| ssb | Neisseria gonorrhoeae MS11 |
44.318 |
96.703 |
0.429 |