Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BMMGA3_RS16115 Genome accession   NZ_CP007739
Coordinates   3319762..3320256 (-) Length   164 a.a.
NCBI ID   WP_003347054.1    Uniprot ID   I3EBY4
Organism   Bacillus methanolicus MGA3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3314762..3325256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMMGA3_RS16090 (BMMGA3_16645) rplI 3315425..3315874 (-) 450 WP_003347046.1 50S ribosomal protein L9 -
  BMMGA3_RS16095 (BMMGA3_16650) - 3315871..3317844 (-) 1974 WP_003347047.1 DHH family phosphoesterase -
  BMMGA3_RS16100 (BMMGA3_16655) - 3317876..3318820 (-) 945 WP_003347048.1 YybS family protein -
  BMMGA3_RS16105 (BMMGA3_16660) - 3319094..3319336 (-) 243 WP_034669143.1 hypothetical protein -
  BMMGA3_RS16110 (BMMGA3_16665) rpsR 3319474..3319713 (-) 240 WP_003347052.1 30S ribosomal protein S18 -
  BMMGA3_RS16115 (BMMGA3_16670) ssbA 3319762..3320256 (-) 495 WP_003347054.1 single-stranded DNA-binding protein Machinery gene
  BMMGA3_RS16120 (BMMGA3_16675) rpsF 3320333..3320620 (-) 288 WP_003347055.1 30S ribosomal protein S6 -
  BMMGA3_RS16125 (BMMGA3_16680) - 3320787..3321941 (-) 1155 WP_003347057.1 glycosyltransferase family 4 protein -
  BMMGA3_RS16130 (BMMGA3_16685) - 3321958..3322476 (-) 519 WP_003347059.1 phosphatase PAP2 family protein -
  BMMGA3_RS16135 (BMMGA3_16690) ychF 3322703..3323803 (-) 1101 WP_003347061.1 redox-regulated ATPase YchF -
  BMMGA3_RS16140 (BMMGA3_16695) - 3323944..3324141 (-) 198 WP_003347063.1 DUF951 domain-containing protein -
  BMMGA3_RS16145 (BMMGA3_16700) - 3324150..3325052 (-) 903 WP_003347065.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18428.15 Da        Isoelectric Point: 4.5716

>NTDB_id=123024 BMMGA3_RS16115 WP_003347054.1 3319762..3320256(-) (ssbA) [Bacillus methanolicus MGA3]
MMNRVVLVGRLTRDPELRYTPNGVPVTTFTLAVNRTFTNQQGEREADFINCVVWRRAAENVANYLKKGSLAGVDGRLQTR
SYEGQDGRRVYVTEVLAESVQFLEPRSASSDRGDSGFYGGPRDQDNPFGNQNQRQNNNQGYTRIDEDPFAGDGQIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=123024 BMMGA3_RS16115 WP_003347054.1 3319762..3320256(-) (ssbA) [Bacillus methanolicus MGA3]
ATGATGAATCGTGTCGTTCTTGTTGGACGGTTGACAAGAGATCCCGAGTTGCGCTACACACCAAATGGAGTTCCGGTTAC
AACTTTTACTCTTGCTGTAAATCGTACGTTTACGAACCAGCAAGGTGAACGGGAAGCAGACTTTATTAACTGTGTTGTTT
GGAGGCGTGCAGCGGAAAATGTCGCAAACTATTTGAAAAAAGGTAGTCTTGCTGGCGTAGATGGACGCTTGCAAACGCGC
AGCTATGAGGGCCAAGACGGAAGACGTGTTTATGTAACAGAAGTCTTAGCAGAAAGTGTTCAATTTCTTGAGCCGAGAAG
TGCTTCAAGTGACAGAGGCGACAGTGGTTTTTATGGTGGTCCAAGGGATCAAGACAATCCATTTGGAAATCAGAATCAAC
GCCAAAACAACAATCAAGGCTATACACGTATAGATGAAGATCCATTTGCCGGTGATGGGCAAATTGACATCTCAGATGAT
GATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I3EBY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.364

100

0.732
  ssb Latilactobacillus sakei subsp. sakei 23K

56.977

100

0.598
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

64.634

0.396
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.378

Multiple sequence alignment