Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   BMMGA3_RS11165 Genome accession   NZ_CP007739
Coordinates   2300152..2300463 (-) Length   103 a.a.
NCBI ID   WP_004435635.1    Uniprot ID   I3EAF6
Organism   Bacillus methanolicus MGA3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2295152..2305463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMMGA3_RS11125 (BMMGA3_11560) - 2295355..2297052 (+) 1698 WP_004435619.1 DEAD/DEAH box helicase -
  BMMGA3_RS11130 (BMMGA3_11565) - 2297021..2297812 (+) 792 WP_004435620.1 YqhG family protein -
  BMMGA3_RS11135 (BMMGA3_11570) - 2297858..2298034 (-) 177 WP_081485685.1 YqzE family protein -
  BMMGA3_RS11140 (BMMGA3_11575) - 2298077..2298391 (-) 315 WP_412150331.1 shikimate kinase -
  BMMGA3_RS18655 (BMMGA3_11580) - 2298447..2298581 (-) 135 WP_318533204.1 shikimate kinase -
  BMMGA3_RS11145 (BMMGA3_11585) comGG 2298595..2298981 (-) 387 WP_004435627.1 competence type IV pilus minor pilin ComGG -
  BMMGA3_RS11150 (BMMGA3_11590) comGF 2298978..2299451 (-) 474 WP_237712842.1 competence type IV pilus minor pilin ComGF -
  BMMGA3_RS11155 (BMMGA3_11595) - 2299402..2299731 (-) 330 WP_004435631.1 hypothetical protein -
  BMMGA3_RS11160 (BMMGA3_11600) comGD 2299706..2300155 (-) 450 WP_004435633.1 competence type IV pilus minor pilin ComGD -
  BMMGA3_RS11165 (BMMGA3_11605) comGC 2300152..2300463 (-) 312 WP_004435635.1 competence type IV pilus major pilin ComGC Machinery gene
  BMMGA3_RS11170 (BMMGA3_11610) comGB 2300479..2301510 (-) 1032 WP_004435638.1 competence type IV pilus assembly protein ComGB -
  BMMGA3_RS11175 (BMMGA3_11615) comGA 2301485..2302567 (-) 1083 WP_004435641.1 competence type IV pilus ATPase ComGA Machinery gene
  BMMGA3_RS11185 (BMMGA3_11625) - 2302927..2303628 (+) 702 WP_004435643.1 helix-turn-helix transcriptional regulator -
  BMMGA3_RS11190 (BMMGA3_11630) - 2303712..2303957 (+) 246 WP_004435645.1 DUF2626 domain-containing protein -
  BMMGA3_RS11195 (BMMGA3_11635) - 2303995..2305104 (-) 1110 WP_004435648.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11471.45 Da        Isoelectric Point: 7.1325

>NTDB_id=123004 BMMGA3_RS11165 WP_004435635.1 2300152..2300463(-) (comGC) [Bacillus methanolicus MGA3]
MKNEKGFTLIEMLIVLLVISILLIITIPNITKHNDNINNKGCEAFIKMVQAQVQAYEIEHKVYPQSVKDLISKGYLNEKE
DKCPNGKEVIITNGVAAVKEGSS

Nucleotide


Download         Length: 312 bp        

>NTDB_id=123004 BMMGA3_RS11165 WP_004435635.1 2300152..2300463(-) (comGC) [Bacillus methanolicus MGA3]
TTGAAAAATGAAAAAGGTTTTACGTTAATAGAAATGTTGATTGTTTTGCTCGTCATTTCAATTTTGTTAATAATTACGAT
TCCAAATATTACAAAGCACAATGACAATATTAACAATAAAGGCTGTGAAGCATTCATAAAAATGGTTCAGGCTCAAGTCC
AGGCATACGAAATTGAACATAAGGTTTATCCTCAATCTGTAAAAGACCTGATTTCAAAAGGTTATCTTAATGAAAAAGAA
GATAAGTGTCCAAATGGGAAAGAAGTTATAATTACGAACGGTGTCGCAGCTGTGAAAGAAGGCTCTTCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I3EAF6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

57.732

94.175

0.544
  comGC Staphylococcus aureus MW2

46.875

93.204

0.437
  comGC Staphylococcus aureus N315

46.875

93.204

0.437

Multiple sequence alignment