Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   RR41_RS01690 Genome accession   NZ_CP007712
Coordinates   358642..359460 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii LAC-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 353642..364460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RR41_RS19560 - 354225..354354 (-) 130 Protein_319 hypothetical protein -
  RR41_RS01660 (ABLAC_03270) rpoZ 354393..354671 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RR41_RS01665 (ABLAC_03280) gmk 354744..355373 (-) 630 WP_000015936.1 guanylate kinase -
  RR41_RS01670 (ABLAC_03290) ispH 355496..356446 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RR41_RS01675 (ABLAC_03300) fimU 356616..357089 (+) 474 WP_001214068.1 GspH/FimT family pseudopilin Machinery gene
  RR41_RS01680 (ABLAC_03310) pilV 357083..357643 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RR41_RS01685 (ABLAC_03320) pilW 357644..358645 (+) 1002 WP_000079199.1 PilW family protein Machinery gene
  RR41_RS01690 (ABLAC_03330) pilX 358642..359460 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RR41_RS01695 (ABLAC_03340) pilY1 359472..363326 (+) 3855 WP_000768944.1 PilC/PilY family type IV pilus protein Machinery gene
  RR41_RS01700 (ABLAC_03350) pilY2 363339..363821 (+) 483 WP_001046421.1 type IV pilin protein Machinery gene
  RR41_RS01705 (ABLAC_03360) pilE 363818..364243 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=122797 RR41_RS01690 WP_000149374.1 358642..359460(+) (pilX) [Acinetobacter baumannii LAC-4]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=122797 RR41_RS01690 WP_000149374.1 358642..359460(+) (pilX) [Acinetobacter baumannii LAC-4]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCTTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment