Detailed information
Bioinformatically predicted
Overview
| Name | fimU | Type | Machinery gene |
| Locus tag | RR41_RS01675 | Genome accession | NZ_CP007712 |
| Coordinates | 356616..357089 (+) | Length | 157 a.a. |
| NCBI ID | WP_001214068.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii LAC-4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 351616..362089
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RR41_RS01655 (ABLAC_03260) | - | 352080..354185 (-) | 2106 | WP_001117591.1 | HD domain-containing protein | - |
| RR41_RS19560 | - | 354225..354354 (-) | 130 | Protein_319 | hypothetical protein | - |
| RR41_RS01660 (ABLAC_03270) | rpoZ | 354393..354671 (-) | 279 | WP_000135049.1 | DNA-directed RNA polymerase subunit omega | - |
| RR41_RS01665 (ABLAC_03280) | gmk | 354744..355373 (-) | 630 | WP_000015936.1 | guanylate kinase | - |
| RR41_RS01670 (ABLAC_03290) | ispH | 355496..356446 (+) | 951 | WP_000407064.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| RR41_RS01675 (ABLAC_03300) | fimU | 356616..357089 (+) | 474 | WP_001214068.1 | GspH/FimT family pseudopilin | Machinery gene |
| RR41_RS01680 (ABLAC_03310) | pilV | 357083..357643 (+) | 561 | WP_002194578.1 | type IV pilus modification protein PilV | Machinery gene |
| RR41_RS01685 (ABLAC_03320) | pilW | 357644..358645 (+) | 1002 | WP_000079199.1 | PilW family protein | Machinery gene |
| RR41_RS01690 (ABLAC_03330) | pilX | 358642..359460 (+) | 819 | WP_000149374.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 16851.46 Da Isoelectric Point: 8.5355
>NTDB_id=122794 RR41_RS01675 WP_001214068.1 356616..357089(+) (fimU) [Acinetobacter baumannii LAC-4]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLEANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLEANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC
Nucleotide
Download Length: 474 bp
>NTDB_id=122794 RR41_RS01675 WP_001214068.1 356616..357089(+) (fimU) [Acinetobacter baumannii LAC-4]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGAGGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAATTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGACGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTTATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGAGGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAATTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGACGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTTATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimU | Acinetobacter baumannii D1279779 |
99.363 |
100 |
0.994 |