Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   RR41_RS01685 Genome accession   NZ_CP007712
Coordinates   357644..358645 (+) Length   333 a.a.
NCBI ID   WP_000079199.1    Uniprot ID   -
Organism   Acinetobacter baumannii LAC-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 352644..363645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RR41_RS19560 - 354225..354354 (-) 130 Protein_319 hypothetical protein -
  RR41_RS01660 (ABLAC_03270) rpoZ 354393..354671 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RR41_RS01665 (ABLAC_03280) gmk 354744..355373 (-) 630 WP_000015936.1 guanylate kinase -
  RR41_RS01670 (ABLAC_03290) ispH 355496..356446 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RR41_RS01675 (ABLAC_03300) fimU 356616..357089 (+) 474 WP_001214068.1 GspH/FimT family pseudopilin Machinery gene
  RR41_RS01680 (ABLAC_03310) pilV 357083..357643 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  RR41_RS01685 (ABLAC_03320) pilW 357644..358645 (+) 1002 WP_000079199.1 PilW family protein Machinery gene
  RR41_RS01690 (ABLAC_03330) pilX 358642..359460 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  RR41_RS01695 (ABLAC_03340) pilY1 359472..363326 (+) 3855 WP_000768944.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35899.59 Da        Isoelectric Point: 6.3350

>NTDB_id=122796 RR41_RS01685 WP_000079199.1 357644..358645(+) (pilW) [Acinetobacter baumannii LAC-4]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGTKN
AAGNFAYYTIPQYRVAAQAARDASPTVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQHVHAADNRNRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=122796 RR41_RS01685 WP_000079199.1 357644..358645(+) (pilW) [Acinetobacter baumannii LAC-4]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCTAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCTCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGCCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTACGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAACTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGCATGTGCATGCTGCTGATAACAGAAATCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

98.799

100

0.988

Multiple sequence alignment