Detailed information
Bioinformatically predicted
Overview
| Name | pilY2 | Type | Machinery gene |
| Locus tag | RR41_RS01700 | Genome accession | NZ_CP007712 |
| Coordinates | 363339..363821 (+) | Length | 160 a.a. |
| NCBI ID | WP_001046421.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii LAC-4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 358339..368821
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RR41_RS01690 (ABLAC_03330) | pilX | 358642..359460 (+) | 819 | WP_000149374.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
| RR41_RS01695 (ABLAC_03340) | pilY1 | 359472..363326 (+) | 3855 | WP_000768944.1 | PilC/PilY family type IV pilus protein | Machinery gene |
| RR41_RS01700 (ABLAC_03350) | pilY2 | 363339..363821 (+) | 483 | WP_001046421.1 | type IV pilin protein | Machinery gene |
| RR41_RS01705 (ABLAC_03360) | pilE | 363818..364243 (+) | 426 | WP_000788337.1 | type IV pilin protein | Machinery gene |
| RR41_RS01710 (ABLAC_03370) | rpsP | 364390..364641 (+) | 252 | WP_000260334.1 | 30S ribosomal protein S16 | - |
| RR41_RS01715 (ABLAC_03380) | rimM | 364661..365209 (+) | 549 | WP_000189236.1 | ribosome maturation factor RimM | - |
| RR41_RS01720 (ABLAC_03390) | trmD | 365255..365995 (+) | 741 | WP_000464598.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| RR41_RS01725 (ABLAC_03400) | rplS | 366203..366571 (+) | 369 | WP_000014562.1 | 50S ribosomal protein L19 | - |
| RR41_RS01730 (ABLAC_03410) | - | 366623..367564 (-) | 942 | WP_085916958.1 | triacylglycerol lipase | - |
| RR41_RS01735 (ABLAC_03420) | - | 367679..368713 (-) | 1035 | WP_001189446.1 | lipase secretion chaperone | - |
Sequence
Protein
Download Length: 160 a.a. Molecular weight: 17563.78 Da Isoelectric Point: 8.4834
>NTDB_id=122799 RR41_RS01700 WP_001046421.1 363339..363821(+) (pilY2) [Acinetobacter baumannii LAC-4]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSASNGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSASNGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ
Nucleotide
Download Length: 483 bp
>NTDB_id=122799 RR41_RS01700 WP_001046421.1 363339..363821(+) (pilY2) [Acinetobacter baumannii LAC-4]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTTCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTTCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilY2 | Acinetobacter baumannii D1279779 |
93.125 |
100 |
0.931 |
| comE | Acinetobacter baylyi ADP1 |
38.953 |
100 |
0.419 |