Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   RR41_RS01565 Genome accession   NZ_CP007712
Coordinates   330561..331301 (+) Length   246 a.a.
NCBI ID   WP_000076097.1    Uniprot ID   -
Organism   Acinetobacter baumannii LAC-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 325561..336301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RR41_RS01550 (ABLAC_03040) ponA 326149..328704 (-) 2556 WP_000736686.1 penicillin-binding protein PBP1a -
  RR41_RS01555 (ABLAC_03050) pilM 328865..329923 (+) 1059 WP_032003108.1 pilus assembly protein PilM Machinery gene
  RR41_RS01560 (ABLAC_03060) pilN 329923..330564 (+) 642 WP_000201231.1 PilN domain-containing protein Machinery gene
  RR41_RS01565 (ABLAC_03070) pilO 330561..331301 (+) 741 WP_000076097.1 type 4a pilus biogenesis protein PilO Machinery gene
  RR41_RS01570 (ABLAC_03080) pilP 331312..331839 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  RR41_RS01575 (ABLAC_03090) pilQ 331902..334067 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  RR41_RS01580 (ABLAC_03100) aroK 334079..334648 (+) 570 WP_000643712.1 shikimate kinase AroK -
  RR41_RS01585 (ABLAC_03110) aroB 334677..335759 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27785.55 Da        Isoelectric Point: 4.8357

>NTDB_id=122790 RR41_RS01565 WP_000076097.1 330561..331301(+) (pilO) [Acinetobacter baumannii LAC-4]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGFFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTIHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=122790 RR41_RS01565 WP_000076097.1 330561..331301(+) (pilO) [Acinetobacter baumannii LAC-4]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTTTTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATTCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.187

100

0.992
  comO Acinetobacter baylyi ADP1

69.008

98.374

0.679

Multiple sequence alignment