Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   RR41_RS01560 Genome accession   NZ_CP007712
Coordinates   329923..330564 (+) Length   213 a.a.
NCBI ID   WP_000201231.1    Uniprot ID   -
Organism   Acinetobacter baumannii LAC-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 324923..335564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RR41_RS01540 (ABLAC_03020) - 324972..325304 (+) 333 WP_000169603.1 hypothetical protein -
  RR41_RS01545 (ABLAC_03030) - 325307..326131 (+) 825 WP_002019666.1 putative RNA methyltransferase -
  RR41_RS01550 (ABLAC_03040) ponA 326149..328704 (-) 2556 WP_000736686.1 penicillin-binding protein PBP1a -
  RR41_RS01555 (ABLAC_03050) pilM 328865..329923 (+) 1059 WP_032003108.1 pilus assembly protein PilM Machinery gene
  RR41_RS01560 (ABLAC_03060) pilN 329923..330564 (+) 642 WP_000201231.1 PilN domain-containing protein Machinery gene
  RR41_RS01565 (ABLAC_03070) pilO 330561..331301 (+) 741 WP_000076097.1 type 4a pilus biogenesis protein PilO Machinery gene
  RR41_RS01570 (ABLAC_03080) pilP 331312..331839 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  RR41_RS01575 (ABLAC_03090) pilQ 331902..334067 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  RR41_RS01580 (ABLAC_03100) aroK 334079..334648 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24033.38 Da        Isoelectric Point: 5.4028

>NTDB_id=122789 RR41_RS01560 WP_000201231.1 329923..330564(+) (pilN) [Acinetobacter baumannii LAC-4]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQREA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=122789 RR41_RS01560 WP_000201231.1 329923..330564(+) (pilN) [Acinetobacter baumannii LAC-4]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGTACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGAAGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709

Multiple sequence alignment