Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DK53_RS05430 Genome accession   NZ_CP007705
Coordinates   1107090..1107596 (-) Length   168 a.a.
NCBI ID   WP_002964231.1    Uniprot ID   -
Organism   Brucella abortus bv. 9 str. C68     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1102090..1112596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK53_RS05410 (DK53_1089) - 1104143..1104772 (+) 630 WP_002967687.1 MarC family protein -
  DK53_RS05415 phnN 1104863..1105442 (-) 580 Protein_1082 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN -
  DK53_RS05420 (DK53_1092) phnF 1105629..1106390 (+) 762 WP_002969113.1 phosphonate metabolism transcriptional regulator PhnF -
  DK53_RS05425 (DK53_1093) - 1106533..1106934 (+) 402 WP_002969546.1 hypothetical protein -
  DK53_RS16525 (DK53_1095) - 1106986..1107186 (+) 201 WP_002971429.1 hypothetical protein -
  DK53_RS05430 (DK53_1094) ssb 1107090..1107596 (-) 507 WP_002964231.1 single-stranded DNA-binding protein Machinery gene
  DK53_RS16530 (DK53_1096) - 1108164..1108364 (+) 201 WP_002964232.1 hypothetical protein -
  DK53_RS05435 (DK53_1097) uvrA 1108495..1111419 (+) 2925 WP_002964233.1 excinuclease ABC subunit UvrA -
  DK53_RS05440 (DK53_1098) - 1111606..1111881 (-) 276 WP_002964234.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18398.22 Da        Isoelectric Point: 5.9777

>NTDB_id=122775 DK53_RS05430 WP_002964231.1 1107090..1107596(-) (ssb) [Brucella abortus bv. 9 str. C68]
MAGSVNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSKEIVLQKFRGELQMLDSRSEGGEGRSFGGGGNRNQMSDYSGGGGDFGSSGPSSGSSGGFSR
DLDDEIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=122775 DK53_RS05430 WP_002964231.1 1107090..1107596(-) (ssb) [Brucella abortus bv. 9 str. C68]
ATGGCTGGTAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGTGCAGATCCTGAAATTCGCCGCCTGAATTCCGGCGA
TATGGTTGCCAACCTGCGCATTGCAACCTCGGAAAGCTGGCGTGACCGCCAGACCGGCGAACGCAAGGATCGCACCGAAT
GGCACAGCGTCGTCATCTTCAATGAAAATCTCGCCAAGGTTGCCGAACAATATCTGAAGAAGGGCGCCAAGGTTTATATC
GAAGGCGCGCTCCAGACCCGCAAGTGGCAGGATCAAAACGGCAATGACCGTTATTCAAAGGAAATCGTGCTGCAAAAATT
CCGTGGAGAGCTTCAAATGCTCGACAGCCGCAGCGAAGGCGGCGAGGGCCGTTCCTTCGGCGGTGGTGGCAACCGCAACC
AGATGTCGGATTATTCCGGCGGCGGTGGAGATTTCGGCTCATCCGGCCCATCTTCGGGCAGCAGCGGCGGTTTCTCGCGC
GATCTGGACGATGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.421

100

0.548
  ssb Vibrio cholerae strain A1552

49.133

100

0.506
  ssb Neisseria meningitidis MC58

38.547

100

0.411
  ssb Neisseria gonorrhoeae MS11

37.778

100

0.405

Multiple sequence alignment