Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DO78_RS05160 | Genome accession | NZ_CP007700 |
| Coordinates | 1013117..1013623 (-) | Length | 168 a.a. |
| NCBI ID | WP_002964231.1 | Uniprot ID | - |
| Organism | Brucella abortus strain NCTC 10505 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1008117..1018623
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DO78_RS15910 (DO78_1011) | - | 1010169..1010800 (+) | 632 | Protein_996 | MarC family protein | - |
| DO78_RS05175 (DO78_1012) | phnN | 1010891..1011469 (-) | 579 | WP_004685664.1 | phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | - |
| DO78_RS05170 (DO78_1013) | phnF | 1011656..1012417 (+) | 762 | WP_002964229.1 | phosphonate metabolism transcriptional regulator PhnF | - |
| DO78_RS05165 (DO78_1014) | - | 1012560..1012961 (+) | 402 | WP_002969546.1 | hypothetical protein | - |
| DO78_RS16695 (DO78_1016) | - | 1013013..1013213 (+) | 201 | WP_002971429.1 | hypothetical protein | - |
| DO78_RS05160 (DO78_1015) | ssb | 1013117..1013623 (-) | 507 | WP_002964231.1 | single-stranded DNA-binding protein | Machinery gene |
| DO78_RS16700 (DO78_1017) | - | 1014191..1014391 (+) | 201 | WP_002964232.1 | hypothetical protein | - |
| DO78_RS05155 (DO78_1018) | uvrA | 1014522..1017446 (+) | 2925 | WP_002964233.1 | excinuclease ABC subunit UvrA | - |
| DO78_RS05150 (DO78_1019) | - | 1017633..1017908 (-) | 276 | WP_002964234.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18398.22 Da Isoelectric Point: 5.9777
>NTDB_id=122774 DO78_RS05160 WP_002964231.1 1013117..1013623(-) (ssb) [Brucella abortus strain NCTC 10505]
MAGSVNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSKEIVLQKFRGELQMLDSRSEGGEGRSFGGGGNRNQMSDYSGGGGDFGSSGPSSGSSGGFSR
DLDDEIPF
MAGSVNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSKEIVLQKFRGELQMLDSRSEGGEGRSFGGGGNRNQMSDYSGGGGDFGSSGPSSGSSGGFSR
DLDDEIPF
Nucleotide
Download Length: 507 bp
>NTDB_id=122774 DO78_RS05160 WP_002964231.1 1013117..1013623(-) (ssb) [Brucella abortus strain NCTC 10505]
ATGGCTGGTAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGTGCAGATCCTGAAATTCGCCGCCTGAATTCCGGCGA
TATGGTTGCCAACCTGCGCATTGCAACCTCGGAAAGCTGGCGTGACCGCCAGACCGGCGAACGCAAGGATCGCACCGAAT
GGCACAGCGTCGTCATCTTCAATGAAAATCTCGCCAAGGTTGCCGAACAATATCTGAAGAAGGGCGCCAAGGTTTATATC
GAAGGCGCGCTCCAGACCCGCAAGTGGCAGGATCAAAACGGCAATGACCGTTATTCAAAGGAAATCGTGCTGCAAAAATT
CCGTGGAGAGCTTCAAATGCTCGACAGCCGCAGCGAAGGCGGCGAGGGCCGTTCCTTCGGCGGTGGTGGCAACCGCAACC
AGATGTCGGATTATTCCGGCGGCGGTGGAGATTTCGGCTCATCCGGCCCATCTTCGGGCAGCAGCGGCGGTTTCTCGCGC
GATCTGGACGATGAAATTCCGTTCTGA
ATGGCTGGTAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGTGCAGATCCTGAAATTCGCCGCCTGAATTCCGGCGA
TATGGTTGCCAACCTGCGCATTGCAACCTCGGAAAGCTGGCGTGACCGCCAGACCGGCGAACGCAAGGATCGCACCGAAT
GGCACAGCGTCGTCATCTTCAATGAAAATCTCGCCAAGGTTGCCGAACAATATCTGAAGAAGGGCGCCAAGGTTTATATC
GAAGGCGCGCTCCAGACCCGCAAGTGGCAGGATCAAAACGGCAATGACCGTTATTCAAAGGAAATCGTGCTGCAAAAATT
CCGTGGAGAGCTTCAAATGCTCGACAGCCGCAGCGAAGGCGGCGAGGGCCGTTCCTTCGGCGGTGGTGGCAACCGCAACC
AGATGTCGGATTATTCCGGCGGCGGTGGAGATTTCGGCTCATCCGGCCCATCTTCGGGCAGCAGCGGCGGTTTCTCGCGC
GATCTGGACGATGAAATTCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
48.421 |
100 |
0.548 |
| ssb | Vibrio cholerae strain A1552 |
49.133 |
100 |
0.506 |
| ssb | Neisseria meningitidis MC58 |
38.547 |
100 |
0.411 |
| ssb | Neisseria gonorrhoeae MS11 |
37.778 |
100 |
0.405 |