Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DK48_RS10565 Genome accession   NZ_CP007681
Coordinates   1034222..1034728 (+) Length   168 a.a.
NCBI ID   WP_002964231.1    Uniprot ID   -
Organism   Brucella abortus strain BDW     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1029222..1039728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK48_RS10555 (DK48_1005) - 1029937..1030212 (+) 276 WP_002964234.1 HU family DNA-binding protein -
  DK48_RS10560 (DK48_1006) uvrA 1030399..1033323 (-) 2925 WP_002964233.1 excinuclease ABC subunit UvrA -
  DK48_RS16935 (DK48_1007) - 1033454..1033654 (-) 201 WP_002964232.1 hypothetical protein -
  DK48_RS10565 (DK48_1009) ssb 1034222..1034728 (+) 507 WP_002964231.1 single-stranded DNA-binding protein Machinery gene
  DK48_RS16940 (DK48_1008) - 1034632..1034832 (-) 201 WP_002971429.1 hypothetical protein -
  DK48_RS10570 (DK48_1010) - 1034884..1035285 (-) 402 WP_002969546.1 hypothetical protein -
  DK48_RS10575 (DK48_1011) phnF 1035428..1036189 (-) 762 WP_002966839.1 phosphonate metabolism transcriptional regulator PhnF -
  DK48_RS10580 (DK48_1012) phnN 1036376..1036954 (+) 579 WP_002969545.1 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN -
  DK48_RS10585 (DK48_1013) - 1037045..1037674 (-) 630 WP_006113308.1 MarC family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18398.22 Da        Isoelectric Point: 5.9777

>NTDB_id=122457 DK48_RS10565 WP_002964231.1 1034222..1034728(+) (ssb) [Brucella abortus strain BDW]
MAGSVNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSKEIVLQKFRGELQMLDSRSEGGEGRSFGGGGNRNQMSDYSGGGGDFGSSGPSSGSSGGFSR
DLDDEIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=122457 DK48_RS10565 WP_002964231.1 1034222..1034728(+) (ssb) [Brucella abortus strain BDW]
ATGGCTGGTAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGTGCAGATCCTGAAATTCGCCGCCTGAATTCCGGCGA
TATGGTTGCCAACCTGCGCATTGCAACCTCGGAAAGCTGGCGTGACCGCCAGACCGGCGAACGCAAGGATCGCACCGAAT
GGCACAGCGTCGTCATCTTCAATGAAAATCTCGCCAAGGTTGCCGAACAATATCTGAAGAAGGGCGCCAAGGTTTATATC
GAAGGCGCGCTCCAGACCCGCAAGTGGCAGGATCAAAACGGCAATGACCGTTATTCAAAGGAAATCGTGCTGCAAAAATT
CCGTGGAGAGCTTCAAATGCTCGACAGCCGCAGCGAAGGCGGCGAGGGCCGTTCCTTCGGCGGTGGTGGCAACCGCAACC
AGATGTCGGATTATTCCGGCGGCGGTGGAGATTTCGGCTCATCCGGCCCATCTTCGGGCAGCAGCGGCGGTTTCTCGCGC
GATCTGGACGATGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.421

100

0.548
  ssb Vibrio cholerae strain A1552

49.133

100

0.506
  ssb Neisseria meningitidis MC58

38.547

100

0.411
  ssb Neisseria gonorrhoeae MS11

37.778

100

0.405

Multiple sequence alignment