Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EP54_RS01905 Genome accession   NZ_CP007670
Coordinates   408606..409109 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain M121     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 408606..428032 408606..409109 within 0


Gene organization within MGE regions


Location: 408606..428032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EP54_RS01905 (EP54_01830) ssbA 408606..409109 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  EP54_RS01910 (EP54_01835) rpsR 409161..409403 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  EP54_RS01915 (EP54_01840) - 409618..410607 (-) 990 WP_047335133.1 Abi family protein -
  EP54_RS01920 (EP54_01845) - 410613..411827 (-) 1215 WP_047335134.1 tyrosine-type recombinase/integrase -
  EP54_RS15080 (EP54_01850) - 411853..412776 (-) 924 WP_048568940.1 helix-turn-helix domain-containing protein -
  EP54_RS01930 (EP54_01855) - 412883..413083 (+) 201 WP_001033058.1 helix-turn-helix transcriptional regulator -
  EP54_RS01935 (EP54_01860) - 413122..413334 (+) 213 WP_033863184.1 helix-turn-helix domain-containing protein -
  EP54_RS01940 (EP54_01865) - 413335..413607 (+) 273 WP_001138301.1 helix-turn-helix domain-containing protein -
  EP54_RS01945 (EP54_01870) - 413619..413765 (+) 147 WP_000784873.1 hypothetical protein -
  EP54_RS01950 (EP54_01875) tscA 413758..413967 (+) 210 WP_001058490.1 type II toxin-antitoxin system antitoxin TscA -
  EP54_RS01955 (EP54_01880) tscT 413970..414275 (+) 306 WP_033863183.1 type II toxin-antitoxin system toxin TscT -
  EP54_RS01960 (EP54_01885) - 414350..415963 (+) 1614 WP_047335135.1 hypothetical protein -
  EP54_RS01965 (EP54_01890) - 416134..416937 (+) 804 WP_033863177.1 bifunctional DNA primase/polymerase -
  EP54_RS01970 (EP54_01895) - 416924..417196 (+) 273 WP_001149387.1 hypothetical protein -
  EP54_RS01975 (EP54_01900) - 417198..417839 (+) 642 WP_047335136.1 pathogenicity island protein -
  EP54_RS01980 (EP54_01905) - 418546..418890 (+) 345 WP_001288441.1 hypothetical protein -
  EP54_RS01985 (EP54_01910) - 418925..419503 (+) 579 WP_000856047.1 hypothetical protein -
  EP54_RS17110 - 419503..419679 (+) 177 WP_001160678.1 hypothetical protein -
  EP54_RS01990 (EP54_01920) - 419732..420259 (+) 528 WP_047335137.1 spore coat protein -
  EP54_RS15310 - 420391..420603 (+) 213 WP_078062700.1 pathogenicity island family protein -
  EP54_RS02000 (EP54_01930) - 420600..421169 (+) 570 WP_047335139.1 terminase small subunit -
  EP54_RS16930 (EP54_01935) - 421444..421614 (+) 171 WP_000022955.1 VraH family peptide resistance protein -
  EP54_RS17185 - 422116..422214 (+) 99 Protein_393 hypothetical protein -
  EP54_RS02010 (EP54_01940) - 423095..424033 (-) 939 WP_001822249.1 Abi family protein -
  EP54_RS17115 - 424072..424773 (-) 702 Protein_395 tyrosine-type recombinase/integrase -
  EP54_RS02025 (EP54_01955) selX 424979..425590 (+) 612 WP_000475326.1 staphylococcal enterotoxin-like toxin X -
  EP54_RS02030 (EP54_01960) - 425959..426327 (+) 369 WP_000849177.1 YxeA family protein -
  EP54_RS02035 (EP54_01965) - 426508..427080 (+) 573 WP_000769720.1 PepSY domain-containing protein -
  EP54_RS02040 (EP54_01970) - 427218..427481 (-) 264 WP_001055897.1 helix-turn-helix domain-containing protein -
  EP54_RS02045 (EP54_01975) - 427781..428032 (+) 252 WP_000466747.1 GlsB/YeaQ/YmgE family stress response membrane protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=122288 EP54_RS01905 WP_000934799.1 408606..409109(+) (ssbA) [Staphylococcus aureus strain M121]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=122288 EP54_RS01905 WP_000934799.1 408606..409109(+) (ssbA) [Staphylococcus aureus strain M121]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment