Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   M0579_RS09660 Genome accession   NZ_CP007668
Coordinates   1909494..1909967 (+) Length   157 a.a.
NCBI ID   WP_002223437.1    Uniprot ID   -
Organism   Neisseria meningitidis M0579     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1904494..1914967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0579_RS09635 (M0579_01789) dnaB 1904917..1906323 (+) 1407 WP_002219448.1 replicative DNA helicase -
  M0579_RS09640 (M0579_01790) pilH 1906625..1907293 (+) 669 WP_025458520.1 GspH/FimT family pseudopilin Machinery gene
  M0579_RS09645 (M0579_01791) pilV 1907323..1907934 (+) 612 WP_025458521.1 type IV pilus modification protein PilV Machinery gene
  M0579_RS09650 (M0579_01792) pilJ 1907931..1908917 (+) 987 WP_025458522.1 PilW family protein Machinery gene
  M0579_RS09655 (M0579_01793) pilK 1908896..1909489 (+) 594 WP_002223435.1 pilus assembly PilX family protein Machinery gene
  M0579_RS09660 (M0579_01794) pilX 1909494..1909967 (+) 474 WP_002223437.1 PilX family type IV pilin Machinery gene
  M0579_RS09665 (M0579_01795) dut 1910702..1911154 (+) 453 WP_002222651.1 dUTP diphosphatase -
  M0579_RS09670 (M0579_01796) dapC 1911231..1912418 (+) 1188 WP_002223438.1 succinyldiaminopimelate transaminase -
  M0579_RS16670 - 1912507..1912632 (+) 126 Protein_1818 IS5/IS1182 family transposase -
  M0579_RS09675 (M0579_01797) yaaA 1912681..1913460 (+) 780 WP_002223439.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17540.31 Da        Isoelectric Point: 9.4262

>NTDB_id=122256 M0579_RS09660 WP_002223437.1 1909494..1909967(+) (pilX) [Neisseria meningitidis M0579]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQNIKSKLEIFVSGYKM
NPKIAEKYNVSVHFVNKEKPRAYSLVGVPKKGTGYTLSVWMNSVGDGYKCRDAASAQAHLETLSSDVGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=122256 M0579_RS09660 WP_002223437.1 1909494..1909967(+) (pilX) [Neisseria meningitidis M0579]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATATTTCCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGAACATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCGAAAAATATAATGTTTCGGTGCATTTTGTCAATAAGGAAAAACCAAGGGCATACAGCTTGGTCGG
CGTTCCAAAGAAGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCAAGCCCATTTGGAGACCTTGTCCTCAGATGTCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAA

Domains

Predicted by InterProScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

97.452

100

0.975
  pilL Neisseria gonorrhoeae MS11

87.261

100

0.873

Multiple sequence alignment