Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   M0579_RS09650 Genome accession   NZ_CP007668
Coordinates   1907931..1908917 (+) Length   328 a.a.
NCBI ID   WP_025458522.1    Uniprot ID   -
Organism   Neisseria meningitidis M0579     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1902931..1913917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0579_RS09630 (M0579_01788) - 1904168..1904755 (-) 588 WP_002223431.1 superoxide dismutase -
  M0579_RS09635 (M0579_01789) dnaB 1904917..1906323 (+) 1407 WP_002219448.1 replicative DNA helicase -
  M0579_RS09640 (M0579_01790) pilH 1906625..1907293 (+) 669 WP_025458520.1 GspH/FimT family pseudopilin Machinery gene
  M0579_RS09645 (M0579_01791) pilV 1907323..1907934 (+) 612 WP_025458521.1 type IV pilus modification protein PilV Machinery gene
  M0579_RS09650 (M0579_01792) pilJ 1907931..1908917 (+) 987 WP_025458522.1 PilW family protein Machinery gene
  M0579_RS09655 (M0579_01793) pilK 1908896..1909489 (+) 594 WP_002223435.1 pilus assembly PilX family protein Machinery gene
  M0579_RS09660 (M0579_01794) pilX 1909494..1909967 (+) 474 WP_002223437.1 PilX family type IV pilin Machinery gene
  M0579_RS09665 (M0579_01795) dut 1910702..1911154 (+) 453 WP_002222651.1 dUTP diphosphatase -
  M0579_RS09670 (M0579_01796) dapC 1911231..1912418 (+) 1188 WP_002223438.1 succinyldiaminopimelate transaminase -
  M0579_RS16670 - 1912507..1912632 (+) 126 Protein_1818 IS5/IS1182 family transposase -
  M0579_RS09675 (M0579_01797) yaaA 1912681..1913460 (+) 780 WP_002223439.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 36115.02 Da        Isoelectric Point: 8.4193

>NTDB_id=122254 M0579_RS09650 WP_025458522.1 1907931..1908917(+) (pilJ) [Neisseria meningitidis M0579]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVPDVAQKNRLFSLKGSSANKLIPITESLNIGYPGFTQRLNALIFQYGIDDVNASADTTVVSSCAKIAK
PGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGRIDGEEGLFRFQLNDDGQWGNPQLLVKKINKMDIRYIYLL
VESPGIQPTNSPRYIYGCPEDDDAGKEETFRYTDKFNSAQDAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGG
NICANRTL

Nucleotide


Download         Length: 987 bp        

>NTDB_id=122254 M0579_RS09650 WP_025458522.1 1907931..1908917(+) (pilJ) [Neisseria meningitidis M0579]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACGTCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCTATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTCCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAGG
GAGCAGTGCAAATAAACTTATCCCCATAACGGAATCTTTAAATATCGGATATCCGGGTTTTACCCAGCGCCTTAACGCAT
TGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTGCCAAAATAGCAAAA
CCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGCATTACAGATTACTAATGATGATAAACAAAATGGAAATAT
CACCCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGACGGTGAGGAAGGTTTGTTCCGCTTCCAATTGA
ATGATGATGGGCAGTGGGGCAATCCTCAGTTGTTGGTTAAAAAGATTAATAAAATGGATATACGGTATATCTATCTTCTC
GTGGAAAGTCCTGGTATACAGCCTACCAATTCTCCCCGGTATATTTACGGTTGCCCTGAAGATGACGATGCCGGCAAAGA
GGAAACATTCAGATATACGGATAAATTCAACAGCGCCCAAGATGCTGTTACGCCCGCCGGGGTGGAGGTTTTATTGAGTA
GCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTTATGCTTACCGTATCGATGCGACAATACGCGGGGGA
AATATATGCGCAAACAGAACGCTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

74.398

100

0.753

Multiple sequence alignment