Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   B6116_RS04315 Genome accession   NZ_CP007667
Coordinates   841414..843633 (-) Length   739 a.a.
NCBI ID   WP_047957321.1    Uniprot ID   -
Organism   Neisseria meningitidis strain B6116/77     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 836414..848633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6116_RS04300 (B6116_00806) - 836449..837291 (-) 843 WP_002222980.1 class II glutamine amidotransferase -
  B6116_RS04305 (B6116_00807) aroB 838581..839660 (-) 1080 WP_047957320.1 3-dehydroquinate synthase -
  B6116_RS04310 (B6116_00808) - 839740..840252 (-) 513 WP_002222978.1 shikimate kinase -
  B6116_RS04315 (B6116_00809) pilQ 841414..843633 (-) 2220 WP_047957321.1 type IV pilus secretin PilQ Machinery gene
  B6116_RS04320 (B6116_00810) pilP 843652..844197 (-) 546 WP_002214522.1 pilus assembly protein PilP Machinery gene
  B6116_RS04325 (B6116_00811) - 844215..844862 (-) 648 WP_002217908.1 type 4a pilus biogenesis protein PilO -
  B6116_RS04330 (B6116_00812) pilN 844863..845462 (-) 600 WP_002214520.1 PilN domain-containing protein Machinery gene
  B6116_RS04335 (B6116_00813) pilM 845465..846580 (-) 1116 WP_002214517.1 type IV pilus biogenesis protein PilM -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 79602.83 Da        Isoelectric Point: 10.0304

>NTDB_id=122190 B6116_RS04315 WP_047957321.1 841414..843633(-) (pilQ) [Neisseria meningitidis strain B6116/77]
MNTKLTKIISGLFVATAAFQTASAGNITDIKVSSLPNKQKIVKVSFDKEIVNPTGFVTSSPARIALDFEQTGISMDQQVL
EYADPLLSKISAAQNSSRARLVLNLNKPGQYNTEVRGNKVWIFINESDDTVSAPARPAVKAAPAAPAKQQAAAPFTESVV
SVSAPFSPAKQQAAASAKQQTAAPAKQQAATPAKQTNIDFRKDGKNAGIIELAALGFAGQPDISQQHDHIIVTLKNHTLP
TTLQRSLDVADFKTPVQKVTLKRLNNDTQLIITTAGNWELVNKSAAPGYFTFQVLPKKQNLESGGVNNAPKTFTGRKISL
DFQDVEIRTILQILAKESGMNIVASDSVNGKMTLSLKDVPWDQALDLVMQARNLDMRQQGNIVNIAPRDELLAKDKAFLQ
AEKDIADLGALYSQNFQLKYKNVEEFRSILRLDNADTTGNRNTLVSGRGSVLIDPATNTLIVTDTRSVIEKFRKLIDELD
VPAQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGGDDKWGAETKINLPITAAANSISLVRAIS
SGALNLELSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIM
TVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRE
LLIFITPRIMGTAGNSLRY

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=122190 B6116_RS04315 WP_047957321.1 841414..843633(-) (pilQ) [Neisseria meningitidis strain B6116/77]
ATGAATACCAAACTGACAAAAATCATTTCCGGTCTCTTTGTCGCAACCGCCGCCTTTCAGACAGCATCGGCAGGAAACAT
TACAGACATCAAAGTTTCCTCCCTGCCCAACAAACAGAAAATCGTCAAAGTCAGCTTTGACAAAGAGATTGTCAACCCGA
CCGGCTTCGTAACCTCCTCACCGGCCCGCATCGCCTTGGACTTTGAACAAACCGGCATTTCCATGGATCAACAGGTACTC
GAATATGCCGATCCCCTGTTGAGCAAAATCAGTGCCGCACAAAACAGCAGCCGTGCGCGTCTGGTTCTGAATCTGAACAA
ACCGGGCCAATACAATACCGAAGTACGCGGGAACAAAGTTTGGATATTCATTAACGAATCGGACGATACCGTGTCCGCCC
CCGCACGCCCCGCCGTAAAAGCCGCGCCTGCCGCACCGGCAAAACAACAGGCTGCCGCACCGTTTACCGAGTCCGTAGTA
TCCGTATCCGCACCGTTCAGCCCGGCAAAACAACAGGCGGCGGCATCAGCAAAACAACAGACGGCAGCACCAGCAAAACA
ACAGGCGGCAACACCAGCAAAACAAACCAATATCGATTTCCGCAAAGACGGCAAAAATGCCGGCATTATCGAATTGGCTG
CATTGGGCTTTGCCGGGCAGCCCGACATCAGCCAACAGCACGACCACATCATCGTTACGCTGAAAAACCATACCCTGCCG
ACCACGCTCCAACGCAGTTTGGATGTGGCAGACTTTAAAACACCGGTTCAAAAGGTTACGCTGAAACGCCTCAATAACGA
CACCCAGCTGATTATCACAACAGCCGGCAACTGGGAACTCGTCAACAAATCCGCCGCGCCCGGATACTTTACCTTCCAAG
TCCTGCCGAAAAAACAAAACCTCGAGTCAGGCGGCGTGAACAATGCGCCCAAAACCTTCACAGGCCGGAAAATCTCCCTT
GACTTCCAAGATGTCGAAATCCGCACCATCCTGCAGATTTTGGCAAAAGAATCCGGGATGAACATTGTTGCCAGCGACTC
CGTCAACGGCAAAATGACCCTCTCCCTCAAAGACGTACCTTGGGATCAGGCTTTGGATTTGGTTATGCAGGCACGCAACC
TCGATATGCGCCAGCAAGGGAACATCGTCAACATCGCGCCCCGCGACGAGCTGCTTGCCAAAGACAAAGCCTTCTTACAG
GCGGAAAAAGACATTGCCGATCTGGGCGCGCTGTATTCACAAAACTTCCAATTGAAATACAAAAATGTGGAAGAATTCCG
CAGCATCCTGCGTTTGGACAATGCCGACACGACCGGAAACCGCAATACGCTTGTCAGCGGCAGGGGCAGCGTGCTGATCG
ATCCCGCCACCAATACCCTGATTGTTACCGATACCCGCAGCGTCATCGAAAAATTCCGCAAACTGATTGACGAATTGGAC
GTACCCGCGCAACAAGTGATGATTGAGGCGCGTATCGTCGAAGCGGCAGACGGCTTCTCGCGCGATTTGGGCGTTAAATT
CGGCGCGACAGGCAAGAAAAAGCTGAAAAATGATACAAGCGCATTCGGCTGGGGGGTAAACTCCGGCTTCGGCGGCGACG
ATAAATGGGGGGCCGAAACCAAAATCAACCTGCCGATTACCGCTGCCGCAAACAGCATTTCGCTGGTGCGCGCGATTTCC
TCCGGTGCCTTGAATTTGGAATTGTCCGCATCCGAATCGCTTTCAAAAACCAAAACGCTTGCCAATCCGCGCGTGCTGAC
CCAAAACCGCAAAGAGGCCAAAATCGAATCCGGTTACGAAATTCCTTTCACCGTAACCTCAATCGCGAACGGCGGCAGCA
GCACGAACACGGAACTCAAAAAAGCCGTCTTGGGGCTGACCGTTACGCCGAACATCACGCCCGACGGCCAAATCATTATG
ACCGTCAAAATCAACAAGGACTCGCCTGCGCAATGTGCCTCCGGTAATCAGACGATCCTGTGTATTTCGACCAAAAACCT
GAATACGCAGGCTATGGTTGAAAACGGCGGCACATTGATTGTCGGCGGTATTTATGAAGAAGACAACGGCAATACGCTGA
CCAAAGTCCCCCTGTTGGGCGACATCCCCGTTATCGGCAACCTCTTTAAAACACGCGGGAAAAAAACCGACCGCCGCGAA
CTGCTGATTTTCATTACCCCGAGGATTATGGGTACGGCCGGCAACAGCCTGCGCTATTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(571-730)

AMIN domain (AMIN)

(43-116)

Secretin and TonB N terminus short domain (STN)

(341-386)

Bacterial type II/III secretion system short domain (Secretin_N)

(414-485)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis M1080

96.715

100

0.996
  pilQ Neisseria meningitidis MC58

95.579

100

0.995
  pilQ Neisseria gonorrhoeae strain FA1090

95.129

100

0.951

Multiple sequence alignment