Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   B6116_RS04320 Genome accession   NZ_CP007667
Coordinates   843652..844197 (-) Length   181 a.a.
NCBI ID   WP_002214522.1    Uniprot ID   Q7DD77
Organism   Neisseria meningitidis strain B6116/77     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 838652..849197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6116_RS04310 (B6116_00808) - 839740..840252 (-) 513 WP_002222978.1 shikimate kinase -
  B6116_RS04315 (B6116_00809) pilQ 841414..843633 (-) 2220 WP_047957321.1 type IV pilus secretin PilQ Machinery gene
  B6116_RS04320 (B6116_00810) pilP 843652..844197 (-) 546 WP_002214522.1 pilus assembly protein PilP Machinery gene
  B6116_RS04325 (B6116_00811) - 844215..844862 (-) 648 WP_002217908.1 type 4a pilus biogenesis protein PilO -
  B6116_RS04330 (B6116_00812) pilN 844863..845462 (-) 600 WP_002214520.1 PilN domain-containing protein Machinery gene
  B6116_RS04335 (B6116_00813) pilM 845465..846580 (-) 1116 WP_002214517.1 type IV pilus biogenesis protein PilM -
  B6116_RS04340 (B6116_00814) - 846732..849128 (+) 2397 WP_047957322.1 penicillin-binding protein 1A -

Sequence


Protein


Download         Length: 181 a.a.        Molecular weight: 20067.55 Da        Isoelectric Point: 4.6512

>NTDB_id=122191 B6116_RS04320 WP_002214522.1 843652..844197(-) (pilP) [Neisseria meningitidis strain B6116/77]
MKHYALLISFLALSACSQGSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETDKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=122191 B6116_RS04320 WP_002214522.1 843652..844197(-) (pilP) [Neisseria meningitidis strain B6116/77]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAGGTTCTGAGGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCACAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGACAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCTGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCGTCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains


Predicted by InterproScan.

(22-163)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  PDB 2IVW
  PDB 4AV2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

100

100

1


Multiple sequence alignment