Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MA06_RS14790 Genome accession   NZ_CP007626
Coordinates   2454905..2455417 (-) Length   170 a.a.
NCBI ID   WP_016112819.1    Uniprot ID   A0A2A8C8L3
Organism   Bacillus pseudomycoides strain 219298     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2449905..2460417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA06_RS14770 (DJ92_2564) rplI 2451038..2451484 (-) 447 WP_018764827.1 50S ribosomal protein L9 -
  MA06_RS14775 (DJ92_2565) - 2451481..2453454 (-) 1974 WP_018764826.1 DHH family phosphoesterase -
  MA06_RS14780 (DJ92_2566) - 2453607..2454545 (-) 939 WP_003202592.1 YybS family protein -
  MA06_RS14785 (DJ92_2567) rpsR 2454626..2454859 (-) 234 WP_000918874.1 30S ribosomal protein S18 -
  MA06_RS14790 (DJ92_2568) ssbA 2454905..2455417 (-) 513 WP_016112819.1 single-stranded DNA-binding protein Machinery gene
  MA06_RS14795 (DJ92_2569) rpsF 2455445..2455735 (-) 291 WP_003209337.1 30S ribosomal protein S6 -
  MA06_RS14800 (DJ92_2570) ychF 2455928..2457028 (-) 1101 WP_006096782.1 redox-regulated ATPase YchF -
  MA06_RS14805 (DJ92_2571) - 2457144..2457302 (-) 159 WP_231398936.1 DUF951 domain-containing protein -
  MA06_RS14810 (DJ92_2572) - 2457362..2458243 (-) 882 WP_003202583.1 mechanosensitive ion channel family protein -
  MA06_RS14815 (DJ92_2573) yyaC 2458516..2459112 (+) 597 WP_018782454.1 spore protease YyaC -
  MA06_RS14820 (DJ92_2574) - 2459133..2459984 (-) 852 WP_018782455.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18439.21 Da        Isoelectric Point: 4.9327

>NTDB_id=121768 MA06_RS14790 WP_016112819.1 2454905..2455417(-) (ssbA) [Bacillus pseudomycoides strain 219298]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGYGNQGSNPFGQSGNSGNSGNSGFTKNDDPFSNVGQP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=121768 MA06_RS14790 WP_016112819.1 2454905..2455417(-) (ssbA) [Bacillus pseudomycoides strain 219298]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCGGTAGC
TACTTTCACGTTAGCTGTAAATCGCGCATTTGCAAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTGGCGAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTATGAGGGGCAAGATGGTAAACGTGTATATGTAACAGAGGTTCTTGCGGAGAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTACGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTGGTAATTCAGGTAACTCAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTAGGTCAACCG
ATTGATATTTCGGACGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A8C8L3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.414

100

0.741
  ssb Latilactobacillus sakei subsp. sakei 23K

57.143

100

0.588
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

37.989

100

0.4

Multiple sequence alignment