Detailed information NTG0121542

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: EG65_RS00220
• Genome accession: NZ_CP007603
• Coordinates: 39594..40724 (+)
• Length: 376 a.a.
• NCBI ID: WP_026938502.1
• Uniprot ID: -
• Organism: Helicobacter pylori J166
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 34594..45724

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EG65_RS00185 (EG65_00200)	panD	35033..35386 (+)	354	WP_000142236.1	aspartate 1-decarboxylase	-
EG65_RS00190 (EG65_00205)	-	35389..35691 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
EG65_RS00195 (EG65_00210)	-	35691..36686 (+)	996	WP_026938506.1	PDZ domain-containing protein	-
EG65_RS00200 (EG65_00215)	comB6	36694..37749 (+)	1056	WP_026938505.1	P-type conjugative transfer protein TrbL	Machinery gene
EG65_RS00205	comB7	37765..37878 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
EG65_RS00210 (EG65_00225)	comB8	37875..38618 (+)	744	WP_026938504.1	type IV secretion system protein	Machinery gene
EG65_RS00215 (EG65_00230)	comB9	38618..39601 (+)	984	WP_026938503.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
EG65_RS00220 (EG65_00235)	comB10	39594..40724 (+)	1131	WP_026938502.1	DNA type IV secretion system protein ComB10	Machinery gene
EG65_RS00225 (EG65_00240)	-	40794..42206 (+)	1413	WP_026938501.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
EG65_RS00230 (EG65_00245)	gmd	42247..43392 (+)	1146	WP_026938500.1	GDP-mannose 4,6-dehydratase	-
EG65_RS00235 (EG65_00250)	-	43385..44317 (+)	933	WP_026938499.1	GDP-L-fucose synthase family protein	-
EG65_RS00240 (EG65_00260)	hypE	44621..45619 (-)	999	WP_026938498.1	hydrogenase expression/formation protein HypE	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41902.43 Da
• Isoelectric Point: 9.9021

>NTDB_id=121542 EG65_RS00220 WP_026938502.1 39594..40724(+) (comB10) [Helicobacter pylori J166]
MNKWLKGAIVFVGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPIDPNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPKGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1131 bp

>NTDB_id=121542 EG65_RS00220 WP_026938502.1 39594..40724(+) (comB10) [Helicobacter pylori J166]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACTAACACGGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATCCAAACAC
AACCCCCCCTAAAAAAGACTTTTCTTTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAAGGGCATTGATGGTTTTACTAACCTTAAAGAAAAAGAC
ATTGCCACTAATGAAAACAAGCTTCTACGCACCATTACAGCTGACAAAATGATACCCGCCTTTTTAATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTCGCTCACATGGGCAAAGCCGTCTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGTAACAATAACAAAATGGGCGAATACCGCCTGGATATTGTATGGAGTCGCATC
ATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAGGGGGCGGATATTAAAGGCTATAACGGCTTGGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCCTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTGATGAGG
CAAAGCGGCATGGGGATCAACCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGTGATTAG
AGAAGGGAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (171-362)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	99.468	100	0.995