Detailed information NTG0121538

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: EG65_RS00200
• Genome accession: NZ_CP007603
• Coordinates: 36694..37749 (+)
• Length: 351 a.a.
• NCBI ID: WP_026938505.1
• Uniprot ID: -
• Organism: Helicobacter pylori J166
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31694..42749

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EG65_RS00170 (EG65_00185)	-	32120..32533 (+)	414	WP_001023005.1	universal stress protein	-
EG65_RS00175 (EG65_00190)	-	32543..32818 (+)	276	WP_026938508.1	ATP-dependent Clp protease adaptor ClpS	-
EG65_RS00180 (EG65_00195)	-	32818..35043 (+)	2226	WP_026938507.1	AAA family ATPase	-
EG65_RS00185 (EG65_00200)	panD	35033..35386 (+)	354	WP_000142236.1	aspartate 1-decarboxylase	-
EG65_RS00190 (EG65_00205)	-	35389..35691 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
EG65_RS00195 (EG65_00210)	-	35691..36686 (+)	996	WP_026938506.1	PDZ domain-containing protein	-
EG65_RS00200 (EG65_00215)	comB6	36694..37749 (+)	1056	WP_026938505.1	P-type conjugative transfer protein TrbL	Machinery gene
EG65_RS00205	comB7	37765..37878 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
EG65_RS00210 (EG65_00225)	comB8	37875..38618 (+)	744	WP_026938504.1	type IV secretion system protein	Machinery gene
EG65_RS00215 (EG65_00230)	comB9	38618..39601 (+)	984	WP_026938503.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
EG65_RS00220 (EG65_00235)	comB10	39594..40724 (+)	1131	WP_026938502.1	DNA type IV secretion system protein ComB10	Machinery gene
EG65_RS00225 (EG65_00240)	-	40794..42206 (+)	1413	WP_026938501.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39830.90 Da
• Isoelectric Point: 8.5786

>NTDB_id=121538 EG65_RS00200 WP_026938505.1 36694..37749(+) (comB6) [Helicobacter pylori J166]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALLEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVICLKKCFALGFYKPLLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSSSMSESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=121538 EG65_RS00200 WP_026938505.1 36694..37749(+) (comB6) [Helicobacter pylori J166]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTTGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGTGCGCTTTTAGAGGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCCGTGTGGCTTTTTTTAAGCATCTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGATTTTACAAGCCTCTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGATTTAAGCCTTTTGTTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGTGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTTCTTCTATGAGCGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACT
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	98.006	100	0.98