Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   EG65_RS00210 Genome accession   NZ_CP007603
Coordinates   37875..38618 (+) Length   247 a.a.
NCBI ID   WP_026938504.1    Uniprot ID   -
Organism   Helicobacter pylori J166     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32875..43618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG65_RS00185 (EG65_00200) panD 35033..35386 (+) 354 WP_000142236.1 aspartate 1-decarboxylase -
  EG65_RS00190 (EG65_00205) - 35389..35691 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  EG65_RS00195 (EG65_00210) - 35691..36686 (+) 996 WP_026938506.1 PDZ domain-containing protein -
  EG65_RS00200 (EG65_00215) comB6 36694..37749 (+) 1056 WP_026938505.1 P-type conjugative transfer protein TrbL Machinery gene
  EG65_RS00205 comB7 37765..37878 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  EG65_RS00210 (EG65_00225) comB8 37875..38618 (+) 744 WP_026938504.1 type IV secretion system protein Machinery gene
  EG65_RS00215 (EG65_00230) comB9 38618..39601 (+) 984 WP_026938503.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  EG65_RS00220 (EG65_00235) comB10 39594..40724 (+) 1131 WP_026938502.1 DNA type IV secretion system protein ComB10 Machinery gene
  EG65_RS00225 (EG65_00240) - 40794..42206 (+) 1413 WP_026938501.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  EG65_RS00230 (EG65_00245) gmd 42247..43392 (+) 1146 WP_026938500.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28755.99 Da        Isoelectric Point: 8.9546

>NTDB_id=121540 EG65_RS00210 WP_026938504.1 37875..38618(+) (comB8) [Helicobacter pylori J166]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISILPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIALSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRND

Nucleotide


Download         Length: 744 bp        

>NTDB_id=121540 EG65_RS00210 WP_026938504.1 37875..38618(+) (comB8) [Helicobacter pylori J166]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAACGATTTGGACATGCAAAGCGTGTTCAGATTGGAGAGGAACCGCTTGAAAATCGCTT
ACAAGCTTTTAGGTTTGATGAGCTTTATTGCGCTTATCTTAGCGATCGTTTTAATCAGTATCCTGCCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGTTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATCTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCTATTGCGGCTAAACTAATGAATGAAAACAAGCTCGTGTATGAAAAGCGTTATAAAATCGCGCTGAGCTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACCCGCTACAGCATCACTGAAATC
GCGCCGACTAACAGGAATGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.972

Multiple sequence alignment