Detailed information NTG0121531

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: ayp1020_RS10395
• Genome accession: NZ_CP007601
• Coordinates: 2196501..2197010 (+)
• Length: 169 a.a.
• NCBI ID: WP_047796980.1
• Uniprot ID: -
• Organism: Staphylococcus capitis subsp. capitis strain AYP1020
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2191501..2202010

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ayp1020_RS10355 (AYP1020_2124)	-	2191601..2192641 (+)	1041	WP_233420433.1	aminotransferase class V-fold PLP-dependent enzyme	-
ayp1020_RS10360 (AYP1020_2125)	-	2192645..2193322 (+)	678	WP_047796975.1	hypothetical protein	-
ayp1020_RS10365 (AYP1020_2126)	-	2193335..2193718 (+)	384	WP_037550912.1	NUDIX hydrolase	-
ayp1020_RS10370 (AYP1020_2127)	-	2193718..2194608 (+)	891	WP_047796976.1	DMT family transporter	-
ayp1020_RS10375 (AYP1020_2128)	-	2194605..2195021 (+)	417	WP_233420434.1	NUDIX domain-containing protein	-
ayp1020_RS10380 (AYP1020_2129)	-	2195025..2195771 (+)	747	WP_047796978.1	HAD family hydrolase	-
ayp1020_RS10385	-	2195853..2196050 (+)	198	Protein_2047	recombinase family protein	-
ayp1020_RS10390 (AYP1020_2130)	rpsF	2196183..2196479 (+)	297	WP_047796979.1	30S ribosomal protein S6	-
ayp1020_RS10395 (AYP1020_2131)	ssbA	2196501..2197010 (+)	510	WP_047796980.1	single-stranded DNA-binding protein	Machinery gene
ayp1020_RS10400 (AYP1020_2132)	rpsR	2197057..2197299 (+)	243	WP_001831354.1	30S ribosomal protein S18	-
ayp1020_RS10405 (AYP1020_2133)	-	2197625..2197879 (+)	255	WP_047796981.1	hypothetical protein	-
ayp1020_RS10410 (AYP1020_2134)	-	2198012..2198584 (+)	573	WP_233420435.1	DUF5067 domain-containing protein	-
ayp1020_RS10415 (AYP1020_2135)	-	2198668..2199021 (+)	354	WP_002434504.1	membrane protein	-
ayp1020_RS10420 (AYP1020_2136)	-	2199092..2199349 (-)	258	WP_002434565.1	helix-turn-helix domain-containing protein	-
ayp1020_RS10425 (AYP1020_2137)	-	2199506..2200255 (+)	750	WP_047796983.1	amidohydrolase family protein	-
ayp1020_RS10430 (AYP1020_2138)	-	2200259..2200519 (-)	261	WP_047796984.1	hypothetical protein	-
ayp1020_RS10435 (AYP1020_2139)	-	2200821..2201075 (+)	255	WP_002434433.1	GlsB/YeaQ/YmgE family stress response membrane protein	-

Sequence

Protein

• Length: 169 a.a.
• Molecular weight: 18653.13 Da
• Isoelectric Point: 4.5762

>NTDB_id=121531 ayp1020_RS10395 WP_047796980.1 2196501..2197010(+) (ssbA) [Staphylococcus capitis subsp. capitis strain AYP1020]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQQGGQHSQNNDFQDYGQGFGGQQSGQNTSYNNNNSSNANQSDNPFANANGPI
DISDDDLPF

Nucleotide

• Length: 510 bp

>NTDB_id=121531 ayp1020_RS10395 WP_047796980.1 2196501..2197010(+) (ssbA) [Staphylococcus capitis subsp. capitis strain AYP1020]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTCATTAACTGTGTTGTCT
TTAGAAGACAAGCTGAAAATGTTAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCGCGT
AGTTATGAAAATCAAGAAGGGCGTCGTATTTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAACAAGGTGGCCAACATTCACAAAACAACGATTTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAATACGTCTTACAATAACAATAATTCATCAAACGCTAATCAATCAGACAACCCATTTGCAAATGCTAATGGCCCAATC
GATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	63.483	100	0.669
ssb	Latilactobacillus sakei subsp. sakei 23K	54.913	100	0.562
ssbB	Bacillus subtilis subsp. subtilis str. 168	57.143	66.272	0.379
ssb	Glaesserella parasuis strain SC1401	34.463	100	0.361