Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SD89_RS09315 Genome accession   NZ_CP010449
Coordinates   1880993..1881589 (-) Length   198 a.a.
NCBI ID   WP_053308677.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NGAS322     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1875993..1886589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD89_RS09280 (SD89_09310) - 1876053..1876358 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  SD89_RS09285 (SD89_09315) ruvX 1876370..1876789 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  SD89_RS09290 (SD89_09320) - 1876786..1877055 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  SD89_RS09295 (SD89_09325) spx 1877169..1877567 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  SD89_RS09300 (SD89_09330) recA 1877858..1878994 (-) 1137 WP_023612576.1 recombinase RecA Machinery gene
  SD89_RS09305 (SD89_09335) cinA 1879083..1880354 (-) 1272 WP_053308675.1 competence/damage-inducible protein A Machinery gene
  SD89_RS09310 (SD89_09340) - 1880423..1880983 (-) 561 WP_053308676.1 DNA-3-methyladenine glycosylase I -
  SD89_RS09315 (SD89_09345) ruvA 1880993..1881589 (-) 597 WP_053308677.1 Holliday junction branch migration protein RuvA Machinery gene
  SD89_RS09320 (SD89_09350) - 1881591..1882811 (-) 1221 WP_053308678.1 MDR family MFS transporter -
  SD89_RS09325 (SD89_09355) hexB 1882822..1884804 (-) 1983 WP_053308679.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21799.13 Da        Isoelectric Point: 6.2537

>NTDB_id=121338 SD89_RS09315 WP_053308677.1 1880993..1881589(-) (ruvA) [Streptococcus pyogenes strain NGAS322]
MYDYIKGQLTKITAKYIVVEANGLGYMINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGNTKARSNKAGNTQLDEAIEAL
LALGYKAAELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=121338 SD89_RS09315 WP_053308677.1 1880993..1881589(-) (ruvA) [Streptococcus pyogenes strain NGAS322]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAGCTAATGGATTGGGCTACAT
GATTAATGTTGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAATTGGTAACCATTTATCTGCATCAAGTGATTCGTG
AGGATGCTCACCTGTTGTTTGGTTTTCACACGGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGTATT
GGTCCGACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTAATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAGGCAGCGGAATTGAAGAAAATTCGTGCCTTCTTTGAAGGAACCTCTGAAACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65.99

99.495

0.657
  ruvA Streptococcus pneumoniae R6

65.99

99.495

0.657
  ruvA Streptococcus pneumoniae D39

65.99

99.495

0.657
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.424

Multiple sequence alignment