Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LMXYSN_RS00275 Genome accession   NZ_CP007583
Coordinates   62377..62919 (+) Length   180 a.a.
NCBI ID   WP_014091617.1    Uniprot ID   -
Organism   Listeria monocytogenes strain XYSN     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 57377..67919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMXYSN_RS00250 (LMxysn_0051) aguA 57771..58880 (+) 1110 WP_085642982.1 agmatine deiminase -
  LMXYSN_RS00255 (LMxysn_0052) - 58897..59676 (+) 780 WP_085642984.1 MurR/RpiR family transcriptional regulator -
  LMXYSN_RS00260 (LMxysn_0053) - 59779..60438 (+) 660 WP_003721665.1 DedA family protein -
  LMXYSN_RS00265 (LMxysn_0054) arcA 60517..61749 (+) 1233 WP_085642986.1 arginine deiminase -
  LMXYSN_RS00270 (LMxysn_0055) rpsF 62028..62321 (+) 294 WP_003721667.1 30S ribosomal protein S6 -
  LMXYSN_RS00275 (LMxysn_0056) ssbA 62377..62919 (+) 543 WP_014091617.1 single-stranded DNA-binding protein Machinery gene
  LMXYSN_RS00280 (LMxysn_0057) rpsR 62963..63202 (+) 240 WP_003721669.1 30S ribosomal protein S18 -
  LMXYSN_RS00285 (LMxysn_0058) - 63353..63964 (+) 612 WP_085642988.1 PepSY domain-containing protein -
  LMXYSN_RS00290 (LMxysn_0059) - 64220..64834 (+) 615 WP_085642990.1 accessory gene regulator ArgB-like protein -
  LMXYSN_RS00295 (LMxysn_0060) - 64818..64979 (+) 162 WP_003721672.1 cyclic lactone autoinducer peptide -
  LMXYSN_RS00300 (LMxysn_0061) - 65075..66370 (+) 1296 WP_085642992.1 sensor histidine kinase -
  LMXYSN_RS00305 (LMxysn_0062) - 66389..67117 (+) 729 WP_085642994.1 LytR/AlgR family response regulator transcription factor -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19692.35 Da        Isoelectric Point: 4.7306

>NTDB_id=121304 LMXYSN_RS00275 WP_014091617.1 62377..62919(+) (ssbA) [Listeria monocytogenes strain XYSN]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNYQGGNTNNNSNYNNGGNNFGQAPTNNGGFAQDQQQSQNQNYQSTN
NDPFASDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=121304 LMXYSN_RS00275 WP_014091617.1 62377..62919(+) (ssbA) [Listeria monocytogenes strain XYSN]
ATGATGAATCGTGTAGTACTTGTAGGACGCTTAACAAAAGATCCTGAATTACGTTACACTCCAGCTGGTGTGGCTGTTGC
GACTTTTACATTAGCTGTAAATCGCACTTTCACTAACCAACAAGGAGAACGAGAAGCTGACTTTATTAATTGTGTTGTTT
GGCGTAAACCGGCAGAAAACGTTGCTAATTTCCTGAAGAAGGGAAGCATGGCGGGCGTTGATGGCCGTGTTCAAACTCGT
AATTACGAGGGAAACGACGGTAAACGTGTTTATGTGACAGAAATTGTGGCTGAGAGCGTTCAATTCCTTGAACCGCGTAA
TTCTAATGGCGGCGGCGGAAATAACTATCAAGGTGGCAATACTAATAACAACAGTAATTATAATAACGGTGGAAATAACT
TCGGACAAGCACCTACTAATAACGGTGGATTCGCACAGGACCAGCAACAATCTCAAAATCAAAATTATCAATCCACTAAC
AATGATCCTTTTGCAAGTGATGGTAAGCCAATCGACATTTCTGATGACGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.556

100

0.656
  ssb Latilactobacillus sakei subsp. sakei 23K

55.556

100

0.556
  ssb Glaesserella parasuis strain SC1401

36.022

100

0.372
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

58.889

0.361

Multiple sequence alignment