Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DK43_RS02125 Genome accession   NZ_CP007573
Coordinates   435769..436695 (+) Length   308 a.a.
NCBI ID   WP_003026180.1    Uniprot ID   -
Organism   Streptococcus anginosus strain SA1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 430769..441695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK43_RS02115 (DK43_02195) amiA3 431919..433898 (+) 1980 WP_022525150.1 peptide ABC transporter substrate-binding protein Regulator
  DK43_RS02120 (DK43_02200) amiC 434273..435769 (+) 1497 WP_022525149.1 ABC transporter permease Regulator
  DK43_RS02125 (DK43_02205) amiD 435769..436695 (+) 927 WP_003026180.1 oligopeptide ABC transporter permease OppC Regulator
  DK43_RS02130 (DK43_02210) amiE 436704..437771 (+) 1068 WP_004224088.1 ABC transporter ATP-binding protein Regulator
  DK43_RS02135 (DK43_02215) amiF 437782..438705 (+) 924 WP_003031730.1 ATP-binding cassette domain-containing protein Regulator
  DK43_RS02140 (DK43_02220) - 438891..439597 (+) 707 Protein_434 HAD family hydrolase -
  DK43_RS02145 (DK43_02225) - 439657..440622 (-) 966 WP_003039503.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34488.54 Da        Isoelectric Point: 9.7392

>NTDB_id=121196 DK43_RS02125 WP_003026180.1 435769..436695(+) (amiD) [Streptococcus anginosus strain SA1]
MATIDKTKFQFVKRDDFASETIDAPAYSYWKSVMRQFLKKKSTVIMLGILVAIILMSFIYPIFSDFDFNDVSKVNDFGAR
YIKPNGQYWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGIVIGGIWGISKTVDRIMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMTITGWVGIAYTIRIQIMRYRDLEYNLASRTLGTPTLKIIVKNIMPQLVSVIVTTASQLLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=121196 DK43_RS02125 WP_003026180.1 435769..436695(+) (amiD) [Streptococcus anginosus strain SA1]
ATGGCTACAATTGATAAGACTAAGTTCCAATTTGTCAAACGCGATGATTTTGCCTCTGAAACGATTGATGCTCCAGCCTA
TTCTTACTGGAAATCAGTTATGCGTCAGTTCCTAAAAAAGAAATCAACAGTTATCATGTTGGGAATTTTGGTCGCTATTA
TTTTGATGAGTTTCATTTATCCGATTTTCTCAGATTTTGACTTTAACGATGTCAGCAAGGTGAATGATTTCGGTGCGCGT
TATATTAAACCAAATGGTCAATATTGGTTTGGTACAGATAGCAACGGGAAATCCCTTTTTGACGGAGTATGGTTTGGAGC
TCGTAACTCTATCCTCATTTCTGTCATTGCAACTGTGATTAACTTAGTTATTGGTATTGTGATTGGTGGTATCTGGGGAA
TTTCCAAAACCGTTGACCGTATCATGATGGAAGTGTACAATATCATTTCTAACATCCCATCTCTCTTGATTGTCATTGTC
TTGACTTATTCAATTGGTGCTGGTTTCTGGAACTTGATTTTTGCTATGACCATCACAGGTTGGGTTGGGATTGCTTATAC
GATTCGTATCCAAATCATGCGTTATCGCGACTTGGAATATAACCTTGCCAGCCGAACTTTGGGTACGCCAACACTGAAAA
TCATTGTAAAAAATATCATGCCACAATTGGTTTCTGTTATTGTGACCACGGCTTCACAACTGCTGCCAAGTTTCATTTCT
TATGAAGCATTTCTATCGTTCTTTGGTTTGGGGCTTCCTGTCACAGTACCAAGTTTGGGACGGTTAATTTCAGATTATTC
ACAAAACGTGACAACAAATGCGTATCTTTTCTGGATTCCATTGACAACCTTGATTTTGGTTTCCCTCTCATTATTCGTTG
TCGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

87.013

100

0.87
  amiD Streptococcus thermophilus LMG 18311

85.065

100

0.851
  amiD Streptococcus thermophilus LMD-9

85.065

100

0.851

Multiple sequence alignment