Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DK43_RS01635 Genome accession   NZ_CP007573
Coordinates   331530..332021 (+) Length   163 a.a.
NCBI ID   WP_003039831.1    Uniprot ID   A0AAI9J8L2
Organism   Streptococcus anginosus strain SA1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 326530..337021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK43_RS01605 (DK43_01670) - 327198..327791 (+) 594 WP_004224551.1 histidine phosphatase family protein -
  DK43_RS01610 (DK43_01675) - 327792..328394 (+) 603 WP_004224553.1 histidine phosphatase family protein -
  DK43_RS01615 (DK43_01680) - 328630..329040 (-) 411 WP_022525324.1 hypothetical protein -
  DK43_RS01620 (DK43_01685) - 329015..329920 (-) 906 WP_004224557.1 phosphodiester glycosidase family protein -
  DK43_RS01625 (DK43_01690) - 329917..330960 (-) 1044 WP_004224559.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  DK43_RS01630 (DK43_01695) rpsF 331228..331518 (+) 291 WP_003026325.1 30S ribosomal protein S6 -
  DK43_RS01635 (DK43_01700) ssb 331530..332021 (+) 492 WP_003039831.1 single-stranded DNA-binding protein Machinery gene
  DK43_RS01640 (DK43_01705) rpsR 332058..332297 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  DK43_RS01645 (DK43_01710) - 332478..333155 (-) 678 WP_004224566.1 DUF1129 family protein -
  DK43_RS01650 (DK43_01715) - 333171..334115 (-) 945 WP_003026319.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18261.97 Da        Isoelectric Point: 4.9008

>NTDB_id=121191 DK43_RS01635 WP_003039831.1 331530..332021(+) (ssb) [Streptococcus anginosus strain SA1]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRASREGQSSGSYTSNNFGNSSSNFGNSTSVNQVPNFSRDENPFGNTNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=121191 DK43_RS01635 WP_003039831.1 331530..332021(+) (ssb) [Streptococcus anginosus strain SA1]
ATGATAAATAACGTTGTACTTGTGGGTCGGATGACCCGAGATGCCGAACTTCGCTATACGCCGCAAAATCAAGCGGTCGC
AACTTTTACTCTTGCTGTCAATCGCAACTTTAAAAATCAAAGTGGCGAGAGAGAAGCAGATTTTATCAACGTTGTGATTT
GGCGTCAGCAGGCAGAAAATCTTGCAAATTGGGCTAAAAAAGGAGCCCTCATCGGAATTACTGGTCGTATTCAGACACGT
AACTACGAAAATCAGCAAGGTCAACGTGTCTATGTGACAGAAGTGGTAGCTGATAATTTCCAATTGTTAGAAAGCCGTGC
CAGCCGTGAAGGTCAATCTTCTGGTAGCTATACTTCTAATAACTTCGGAAATTCATCTTCCAATTTTGGGAACTCAACTT
CTGTTAACCAAGTCCCCAACTTTTCTCGTGATGAAAATCCATTTGGGAATACCAATCCAATGGATATCTCAGATGACGAT
CTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.895

100

0.607
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.977

100

0.601
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.871

0.368

Multiple sequence alignment