Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DX05_RS08850 Genome accession   NZ_CP007572
Coordinates   1771087..1771578 (-) Length   163 a.a.
NCBI ID   WP_000609585.1    Uniprot ID   A0AAV3JH34
Organism   Streptococcus agalactiae strain GBS6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1769187..1804966 1771087..1771578 within 0


Gene organization within MGE regions


Location: 1769187..1804966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DX05_RS08845 (DX05_08985) ltrA 1769187..1770506 (-) 1320 WP_000561483.1 group II intron reverse transcriptase/maturase -
  DX05_RS08850 (DX05_08990) ssbA 1771087..1771578 (-) 492 WP_000609585.1 single-stranded DNA-binding protein Machinery gene
  DX05_RS08855 (DX05_08995) rpsF 1771590..1771877 (-) 288 WP_001151773.1 30S ribosomal protein S6 -
  DX05_RS08860 (DX05_09000) mutY 1772940..1774094 (+) 1155 WP_161512068.1 A/G-specific adenine glycosylase -
  DX05_RS08865 (DX05_09005) - 1774271..1774864 (+) 594 WP_000402395.1 helix-turn-helix transcriptional regulator -
  DX05_RS08870 (DX05_09010) trxA 1774910..1775242 (-) 333 WP_001932060.1 thioredoxin -
  DX05_RS08875 (DX05_09015) - 1775305..1775805 (-) 501 WP_000446812.1 phosphatase PAP2 family protein -
  DX05_RS08880 (DX05_09020) - 1775809..1778148 (-) 2340 WP_001060328.1 endonuclease MutS2 -
  DX05_RS08885 (DX05_09025) - 1778233..1778775 (-) 543 WP_000949954.1 CvpA family protein -
  DX05_RS08890 (DX05_09030) zapA 1778778..1779089 (-) 312 WP_000448289.1 cell division protein ZapA -
  DX05_RS08895 (DX05_09035) rnhC 1779200..1780093 (+) 894 WP_001092534.1 ribonuclease HIII -
  DX05_RS08900 (DX05_09040) lepB 1780109..1780702 (+) 594 WP_000657514.1 signal peptidase I -
  DX05_RS08905 (DX05_09045) - 1780831..1783251 (+) 2421 WP_000451615.1 ATP-dependent RecD-like DNA helicase -
  DX05_RS08910 (DX05_09050) - 1783365..1783847 (+) 483 WP_000255475.1 hypothetical protein -
  DX05_RS08915 (DX05_09055) - 1783975..1785387 (+) 1413 WP_017771557.1 IS1182 family transposase -
  DX05_RS08920 (DX05_09060) ltrA 1785437..1786714 (-) 1278 WP_001292556.1 group II intron reverse transcriptase/maturase -
  DX05_RS08925 (DX05_09065) dinB 1787338..1788432 (-) 1095 WP_000904561.1 DNA polymerase IV -
  DX05_RS08930 (DX05_09070) pflB 1788617..1790929 (+) 2313 WP_000246712.1 formate C-acetyltransferase -
  DX05_RS08935 (DX05_09075) - 1791030..1791404 (+) 375 WP_000931880.1 pyridoxamine 5'-phosphate oxidase family protein -
  DX05_RS08940 (DX05_09080) - 1791439..1792368 (-) 930 WP_000598176.1 serine hydrolase domain-containing protein -
  DX05_RS08945 (DX05_09085) - 1792365..1793120 (-) 756 WP_000171847.1 CppA family protein -
  DX05_RS08950 (DX05_09090) - 1793245..1794141 (+) 897 WP_001006192.1 sulfite exporter TauE/SafE family protein -
  DX05_RS08955 (DX05_09095) gla 1794220..1795068 (-) 849 WP_000570241.1 aquaglyceroporin Gla -
  DX05_RS08960 (DX05_09100) - 1795237..1795689 (-) 453 WP_000192461.1 universal stress protein -
  DX05_RS08965 (DX05_09105) - 1795707..1796909 (-) 1203 WP_000389617.1 MFS transporter -
  DX05_RS08970 (DX05_09110) - 1797065..1797724 (+) 660 WP_001016380.1 Crp/Fnr family transcriptional regulator -
  DX05_RS08975 (DX05_09115) - 1797748..1800033 (+) 2286 WP_001270177.1 Xaa-Pro dipeptidyl-peptidase -
  DX05_RS08980 (DX05_09120) - 1800037..1800396 (+) 360 WP_000771943.1 hypothetical protein -
  DX05_RS08985 (DX05_09125) - 1800442..1801422 (+) 981 WP_000100668.1 polyprenyl synthetase family protein -
  DX05_RS08990 (DX05_09130) cydC 1801507..1803255 (-) 1749 WP_000472835.1 thiol reductant ABC exporter subunit CydC -
  DX05_RS08995 (DX05_09135) cydD 1803248..1804966 (-) 1719 WP_000884528.1 thiol reductant ABC exporter subunit CydD -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18165.81 Da        Isoelectric Point: 4.9119

>NTDB_id=121173 DX05_RS08850 WP_000609585.1 1771087..1771578(-) (ssbA) [Streptococcus agalactiae strain GBS6]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=121173 DX05_RS08850 WP_000609585.1 1771087..1771578(-) (ssbA) [Streptococcus agalactiae strain GBS6]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAATGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.714

100

0.62
  ssb Latilactobacillus sakei subsp. sakei 23K

59.064

100

0.62
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.963

66.871

0.374
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368

Multiple sequence alignment