Detailed information NTG0121123

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: DK42_RS08795
• Genome accession: NZ_CP007571
• Coordinates: 1766248..1766739 (-)
• Length: 163 a.a.
• NCBI ID: WP_000609585.1
• Uniprot ID: A0AAV3JH34
• Organism: Streptococcus agalactiae strain GBS2-NM
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	1766248..1786090	1766248..1766739	within	0

Gene organization within MGE regions

Location: 1766248..1786090

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DK42_RS08795 (DK42_08940)	ssbA	1766248..1766739 (-)	492	WP_000609585.1	single-stranded DNA-binding protein	Machinery gene
DK42_RS08800 (DK42_08945)	rpsF	1766751..1767038 (-)	288	WP_001151773.1	30S ribosomal protein S6	-
DK42_RS08805 (DK42_08950)	mutY	1768101..1769255 (+)	1155	WP_161512068.1	A/G-specific adenine glycosylase	-
DK42_RS08810 (DK42_08955)	-	1769432..1770025 (+)	594	WP_000402395.1	helix-turn-helix transcriptional regulator	-
DK42_RS08815 (DK42_08960)	trxA	1770071..1770403 (-)	333	WP_001932060.1	thioredoxin	-
DK42_RS08820 (DK42_08965)	-	1770466..1770966 (-)	501	WP_000446812.1	phosphatase PAP2 family protein	-
DK42_RS08825 (DK42_08970)	-	1770970..1773309 (-)	2340	WP_001060328.1	endonuclease MutS2	-
DK42_RS08830 (DK42_08975)	-	1773394..1773936 (-)	543	WP_000949954.1	CvpA family protein	-
DK42_RS08835 (DK42_08980)	zapA	1773939..1774250 (-)	312	WP_000448289.1	cell division protein ZapA	-
DK42_RS08840 (DK42_08985)	rnhC	1774361..1775254 (+)	894	WP_001092534.1	ribonuclease HIII	-
DK42_RS08845 (DK42_08990)	lepB	1775270..1775863 (+)	594	WP_000657514.1	signal peptidase I	-
DK42_RS08850 (DK42_08995)	-	1775992..1778412 (+)	2421	WP_000451615.1	ATP-dependent RecD-like DNA helicase	-
DK42_RS08855 (DK42_09000)	-	1778526..1779008 (+)	483	WP_000255475.1	hypothetical protein	-
DK42_RS08860 (DK42_09005)	-	1779136..1780548 (+)	1413	WP_017771557.1	IS1182 family transposase	-
DK42_RS08865 (DK42_09010)	ltrA	1780598..1781875 (-)	1278	WP_001292556.1	group II intron reverse transcriptase/maturase	-
DK42_RS08870 (DK42_09015)	dinB	1782499..1783593 (-)	1095	WP_000904561.1	DNA polymerase IV	-
DK42_RS08875 (DK42_09020)	pflB	1783778..1786090 (+)	2313	WP_000246712.1	formate C-acetyltransferase	-

Sequence

Protein

• Length: 163 a.a.
• Molecular weight: 18165.81 Da
• Isoelectric Point: 4.9119

>NTDB_id=121123 DK42_RS08795 WP_000609585.1 1766248..1766739(-) (ssbA) [Streptococcus agalactiae strain GBS2-NM]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF

Nucleotide

• Length: 492 bp

>NTDB_id=121123 DK42_RS08795 WP_000609585.1 1766248..1766739(-) (ssbA) [Streptococcus agalactiae strain GBS2-NM]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAATGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	57.714	100	0.62
ssb	Latilactobacillus sakei subsp. sakei 23K	59.064	100	0.62
ssbB	Streptococcus sobrinus strain NIDR 6715-7	55.963	66.871	0.374
ssbB	Bacillus subtilis subsp. subtilis str. 168	56.604	65.031	0.368