Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | DK41_RS08570 | Genome accession | NZ_CP007570 |
| Coordinates | 1744190..1744681 (-) | Length | 163 a.a. |
| NCBI ID | WP_000609585.1 | Uniprot ID | A0AAV3JH34 |
| Organism | Streptococcus agalactiae strain GBS1-NY | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1739190..1749681
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DK41_RS08550 (DK41_08655) | - | 1740073..1740744 (-) | 672 | WP_000174845.1 | DUF1129 family protein | - |
| DK41_RS08555 (DK41_08660) | - | 1740769..1741713 (-) | 945 | WP_000812121.1 | magnesium transporter CorA family protein | - |
| DK41_RS08560 (DK41_08665) | rpsR | 1741883..1742122 (-) | 240 | WP_000068665.1 | 30S ribosomal protein S18 | - |
| DK41_RS08565 (DK41_08670) | ltrA | 1742290..1743609 (-) | 1320 | WP_000561483.1 | group II intron reverse transcriptase/maturase | - |
| DK41_RS08570 (DK41_08675) | ssbA | 1744190..1744681 (-) | 492 | WP_000609585.1 | single-stranded DNA-binding protein | Machinery gene |
| DK41_RS08575 (DK41_08680) | rpsF | 1744693..1744980 (-) | 288 | WP_001151773.1 | 30S ribosomal protein S6 | - |
| DK41_RS08580 (DK41_08685) | mutY | 1746043..1747197 (+) | 1155 | WP_161512068.1 | A/G-specific adenine glycosylase | - |
| DK41_RS08585 (DK41_08690) | - | 1747374..1747967 (+) | 594 | WP_000402395.1 | helix-turn-helix transcriptional regulator | - |
| DK41_RS08590 (DK41_08695) | trxA | 1748013..1748345 (-) | 333 | WP_001932060.1 | thioredoxin | - |
| DK41_RS08595 (DK41_08700) | - | 1748408..1748908 (-) | 501 | WP_041330047.1 | phosphatase PAP2 family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18165.81 Da Isoelectric Point: 4.9119
>NTDB_id=121070 DK41_RS08570 WP_000609585.1 1744190..1744681(-) (ssbA) [Streptococcus agalactiae strain GBS1-NY]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=121070 DK41_RS08570 WP_000609585.1 1744190..1744681(-) (ssbA) [Streptococcus agalactiae strain GBS1-NY]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAATGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTGA
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAATGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.714 |
100 |
0.62 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.064 |
100 |
0.62 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
55.963 |
66.871 |
0.374 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
65.031 |
0.368 |