Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   B224_RS17350 Genome accession   NZ_CP007567
Coordinates   3828064..3828639 (+) Length   191 a.a.
NCBI ID   WP_005328769.1    Uniprot ID   -
Organism   Aeromonas media WS     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3823064..3833639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B224_RS23855 (B224_4890) - 3823675..3823800 (+) 126 WP_005328766.1 hypothetical protein -
  B224_RS17340 (B224_4893) uvrA 3823987..3826815 (-) 2829 WP_005328767.1 excinuclease ABC subunit UvrA -
  B224_RS17345 (B224_4894) - 3826910..3827548 (-) 639 WP_139750669.1 LuxR C-terminal-related transcriptional regulator -
  B224_RS17350 (B224_4895) ssb 3828064..3828639 (+) 576 WP_005328769.1 single-stranded DNA-binding protein Machinery gene
  B224_RS17355 (B224_4896) - 3828796..3829566 (+) 771 WP_005328770.1 substrate-binding periplasmic protein -
  B224_RS23860 (B224_4897) - 3829615..3829737 (-) 123 WP_080675244.1 hypothetical protein -
  B224_RS17365 (B224_4898) yjbD 3830078..3830362 (+) 285 WP_025328558.1 DUF3811 domain-containing protein -
  B224_RS17370 cspA 3830756..3830968 (+) 213 WP_025328559.1 RNA chaperone/antiterminator CspA -
  B224_RS17375 (B224_4900) - 3831206..3832591 (-) 1386 WP_005328779.1 ATP-binding protein -
  B224_RS17380 (B224_4902) - 3832599..3833321 (-) 723 WP_041207099.1 response regulator -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20953.37 Da        Isoelectric Point: 5.9247

>NTDB_id=121020 B224_RS17350 WP_005328769.1 3828064..3828639(+) (ssb) [Aeromonas media WS]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGAGQGMGGQQSQGNWGQPQQAAPQQAMQRPAAAPQQNMQP
QGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=121020 B224_RS17350 WP_005328769.1 3828064..3828639(+) (ssb) [Aeromonas media WS]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGAACCG
AGTGGCACCGCGTGGTGTTCATGGGCAAGCTGGCCGAAGTGGCCGGCGAGTACCTGAAGAAGGGTTCCCAGGTCTATGTC
GAAGGCAAGCTGCAGACCCGCAAGTGGCAGGATCAGAGTGGCCAGGAGCGTTACACCACAGAGGTGCTGGTCGACAGCTT
CACCGGCGTAATGCAGATGCTGGGCGGCCGTCCGCAAGGCGGCGCAGGCCAGGGCATGGGTGGTCAACAGTCCCAGGGCA
ACTGGGGTCAGCCACAACAGGCCGCCCCCCAGCAAGCGATGCAACGCCCGGCCGCCGCCCCGCAGCAGAATATGCAGCCG
CAGGGTGGTTACGGTCGTCCTGCCCAGCAGCCTCAGTCTGCACCGCCGGTCTACAACGAGCCGCCGATGGATTTCGACGA
CGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.744

100

0.712
  ssb Glaesserella parasuis strain SC1401

53.968

98.953

0.534
  ssb Neisseria meningitidis MC58

46.809

98.429

0.461
  ssb Neisseria gonorrhoeae MS11

46.237

97.382

0.45

Multiple sequence alignment