Detailed information NTG0120994

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: V428_RS20660
• Genome accession: NZ_CP007566
• Coordinates: 4616801..4617673 (+)
• Length: 290 a.a.
• NCBI ID: WP_016352170.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila subsp. hydrophila AL09-71 isolate 4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4611801..4622673

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V428_RS20640 (V428_21365)	nadC	4612106..4612963 (+)	858	WP_016352165.1	carboxylating nicotinate-nucleotide diphosphorylase	-
V428_RS23720	tapA	4613286..4613708 (+)	423	WP_016352167.1	type IVa pilus major pilin TapA	-
V428_RS20650 (V428_21375)	pilB	4613715..4615421 (+)	1707	WP_016352168.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
V428_RS20655 (V428_21380)	pilC	4615537..4616778 (+)	1242	WP_016352169.1	type II secretion system F family protein	Machinery gene
V428_RS20660 (V428_21385)	pilD	4616801..4617673 (+)	873	WP_016352170.1	A24 family peptidase	Machinery gene
V428_RS20665 (V428_21390)	coaE	4617693..4618307 (+)	615	WP_016352171.1	dephospho-CoA kinase	-
V428_RS20670 (V428_21395)	zapD	4618345..4619067 (+)	723	WP_016352172.1	cell division protein ZapD	-
V428_RS20675 (V428_21400)	yacG	4619077..4619271 (+)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
V428_RS20680 (V428_21405)	mutT	4619332..4619745 (-)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
V428_RS20685 (V428_21410)	-	4619754..4620938 (-)	1185	WP_016352174.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32464.76 Da
• Isoelectric Point: 6.7410

>NTDB_id=120994 V428_RS20660 WP_016352170.1 4616801..4617673(+) (pilD) [Aeromonas hydrophila subsp. hydrophila AL09-71 isolate 4]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEERYNLMVPRSACPHCGHA
ITAIENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVTATFAPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLATFL

Nucleotide

• Length: 873 bp

>NTDB_id=120994 V428_RS20660 WP_016352170.1 4616801..4617673(+) (pilD) [Aeromonas hydrophila subsp. hydrophila AL09-71 isolate 4]
ATGTTGCTGATCACTGACGTTTTTCACAGCTTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCAGAGACACAGCCGCAGCAGGAAGAACGCTACAACCTGATGGTGCCGCGTTCTGCCTGTCCTCATTGCGGCCACGCA
ATTACGGCCATAGAGAACATCCCCCTACTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCTATCTC
GGCCCGTTATCCTCTGGTAGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGTCACCGCAACATTCGCACCGGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTACTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCTGACCAG
CTGACCCTGCCATTGCTATGGGGCGGTCTGCTGTTCAATTTGGCTGGGGGATTTGTACCGCTGGCCGATGCGGTGATCGG
TGCGATGGCTGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGTTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGTTGGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGGATTGGTCTCATCCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTATCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCGCGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.839	98.621	0.6
pilD	Vibrio campbellii strain DS40M4	55.594	98.621	0.548
pilD	Acinetobacter baumannii D1279779	54.035	98.276	0.531
pilD	Acinetobacter nosocomialis M2	54.035	98.276	0.531
pilD	Neisseria gonorrhoeae MS11	48.872	91.724	0.448