Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | E1470_RS00570 | Genome accession | NZ_CP010344 |
| Coordinates | 121340..121780 (-) | Length | 146 a.a. |
| NCBI ID | WP_000360895.1 | Uniprot ID | B7LFX5 |
| Organism | Escherichia coli ECC-1470 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 116340..126780
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E1470_RS00550 (E1470_c01030) | coaE | 116830..117450 (-) | 621 | WP_001269527.1 | dephospho-CoA kinase | - |
| E1470_RS27560 | - | 117475..117519 (+) | 45 | WP_120795372.1 | protein YacM | - |
| E1470_RS00555 (E1470_c01040) | guaC | 117675..118718 (+) | 1044 | WP_001217338.1 | GMP reductase | - |
| E1470_RS00560 (E1470_c01050) | hofC | 118753..119955 (-) | 1203 | WP_000157234.1 | protein transport protein HofC | - |
| E1470_RS00565 (E1470_c01060) | pilB | 119945..121330 (-) | 1386 | WP_023566274.1 | type II secretion system protein GspE | Machinery gene |
| E1470_RS00570 (E1470_c01070) | pilA | 121340..121780 (-) | 441 | WP_000360895.1 | prepilin peptidase-dependent pilin | Machinery gene |
| E1470_RS00580 (E1470_c01080) | nadC | 121983..122876 (-) | 894 | WP_001135174.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| E1470_RS00585 (E1470_c01090) | ampD | 122964..123515 (+) | 552 | WP_000923721.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| E1470_RS00590 (E1470_c01100) | ampE | 123512..124366 (+) | 855 | WP_000171999.1 | beta-lactamase regulator AmpE | - |
| E1470_RS00595 (E1470_c01110) | aroP | 124409..125782 (-) | 1374 | WP_000969915.1 | aromatic amino acid transporter AroP | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15602.71 Da Isoelectric Point: 4.3927
>NTDB_id=120129 E1470_RS00570 WP_000360895.1 121340..121780(-) (pilA) [Escherichia coli ECC-1470]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTH
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTH
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
Nucleotide
Download Length: 441 bp
>NTDB_id=120129 E1470_RS00570 WP_000360895.1 121340..121780(-) (pilA) [Escherichia coli ECC-1470]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCAC
TATGTTTCAGCCATGAGTGTGGCAAAAGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGACTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCAC
TATGTTTCAGCCATGAGTGTGGCAAAAGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGACTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
43.089 |
84.247 |
0.363 |