Detailed information NTG0120129

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: UIB01_RS02960
• Genome accession: NZ_CP007509
• Coordinates: 657458..658795 (-)
• Length: 445 a.a.
• NCBI ID: WP_038656721.1
• Uniprot ID: -
• Organism: Stutzerimonas decontaminans strain 19SMN4
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 652458..663795

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UIB01_RS02950 (UIB01_02985)	-	654545..656140 (-)	1596	WP_038656716.1	PleD family two-component system response regulator	-
UIB01_RS02955 (UIB01_02990)	-	656358..657416 (+)	1059	WP_038656718.1	DUF2333 family protein	-
UIB01_RS02960 (UIB01_02995)	pilR	657458..658795 (-)	1338	WP_038656721.1	sigma-54 dependent transcriptional regulator	Regulator
UIB01_RS02965 (UIB01_03000)	pilS	658927..660519 (-)	1593	WP_038656723.1	PAS domain-containing sensor histidine kinase	Regulator
UIB01_RS02970 (UIB01_03005)	-	660509..660742 (-)	234	WP_038656725.1	PP0621 family protein	-
UIB01_RS02975 (UIB01_03010)	-	660863..661852 (-)	990	WP_038656727.1	outer membrane protein assembly factor BamD	-
UIB01_RS02980 (UIB01_03015)	rluD	662058..663032 (+)	975	WP_038656729.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
UIB01_RS02985 (UIB01_03020)	pgeF	663029..663763 (+)	735	WP_038656731.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49522.07 Da
• Isoelectric Point: 6.2839

>NTDB_id=120129 UIB01_RS02960 WP_038656721.1 657458..658795(-) (pilR) [Stutzerimonas decontaminans strain 19SMN4]
MTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARECLAREQYDLCLTDMRLPDGSGLELVQYIQQQHPQLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLNRLRELVATALRLRAPVAEAPVDSRLLGSSPPMKVLRKQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRNEKPFVPVNCGAIPSELMESEFFGHKKGSFSGAIEDKPGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGAQEVMVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIGLLADAM
LRRLAQECGDSIARLHPDALAKLENYRFPGNVRELENMLERAYTLCDGDEIKAGDLRLADSPGLSENGEASLAQIDNLED
HLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGLD

Nucleotide

• Length: 1338 bp

>NTDB_id=120129 UIB01_RS02960 WP_038656721.1 657458..658795(-) (pilR) [Stutzerimonas decontaminans strain 19SMN4]
ATGACCGCGCGCCAGAAAGCACTGATCATCGATGACGAGCCGGATATCCGCGAGCTGCTGGAAATCACCCTTGGCCGCAT
GAAGCTCGATACCCGCAGCGCGCGCAACCTCAAAGAAGCACGCGAATGCCTGGCCCGCGAGCAGTACGACCTGTGCCTGA
CCGATATGCGCCTGCCCGATGGCAGCGGCTTGGAGCTGGTGCAGTACATCCAGCAGCAGCACCCGCAGCTGCCGGTGGCG
ATGATCACCGCGTACGGTAGCCTGGACACCGCGATCGGCGCGCTCAAGGCAGGCGCATTCGACTTTCTCACTAAACCAGT
AGACCTCAATCGTCTGCGTGAGCTGGTCGCCACGGCGTTGCGTCTGCGCGCCCCGGTCGCGGAGGCGCCGGTAGACAGTC
GGCTGCTGGGCAGCTCGCCGCCGATGAAGGTCTTGCGCAAACAGATTGGCAAGCTCGCCCGCAGTCAGGCACCGGTGTAC
ATCAGCGGTGAGTCCGGCAGCGGCAAGGAGCTGGTTGCCCGGCTGATCCACGAGCAGGGCCCACGCAATGAAAAGCCATT
CGTGCCAGTCAACTGCGGTGCGATACCTTCAGAGCTAATGGAAAGCGAATTCTTTGGCCACAAGAAGGGTAGCTTCAGTG
GAGCTATCGAGGACAAGCCGGGTCTGTTCCAGGCTGCCAATGGCGGCACCCTGTTTCTCGATGAAGTAGCGGATCTGCCG
CTGCCGATGCAGGTCAAGCTGCTGCGCGCCATTCAGGAGAAAGCCGTCCGTGCGGTGGGCGGCGCACAAGAGGTGATGGT
CGATGTACGCATCCTCTGCGCGACCCACAAAGATCTGGCCGCCGAGGTCGCGGCGGGCCGCTTCCGTCAGGATCTTTACT
ACCGACTGAACGTCATCGAGCTGCGCGTGCCGCCGCTGCGCGAGCGGCGCGAGGATATCGGCCTGCTGGCCGATGCCATG
CTCCGTCGGCTGGCCCAGGAATGTGGCGACAGCATCGCCAGGCTGCATCCGGATGCCTTGGCCAAGCTGGAGAATTATCG
TTTTCCGGGGAACGTACGCGAACTGGAGAACATGCTTGAGCGCGCCTATACGCTCTGCGATGGGGACGAGATCAAGGCTG
GCGATTTGCGCCTTGCCGACAGCCCGGGCCTTTCGGAAAACGGCGAGGCCAGCCTGGCCCAGATCGACAACCTGGAAGAC
CATCTGGAAGAGATCGAACGCAAACTGATCATGCAGGCGCTGGAGGAAACGCGCTGGAACCGCACCGCAGCGGCCCAGCG
CCTCGGTCTGACTTTCCGTTCGATGCGCTACCGATTGAAGAAACTCGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

• Response regulator receiver domain (Response_reg) (8-116)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	86.261	99.775	0.861
pilR	Acinetobacter baumannii strain A118	49.237	100	0.508
luxO	Vibrio cholerae strain A1552	37.808	100	0.38