Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   UIB01_RS02965 Genome accession   NZ_CP007509
Coordinates   658927..660519 (-) Length   530 a.a.
NCBI ID   WP_038656723.1    Uniprot ID   -
Organism   Stutzerimonas decontaminans strain 19SMN4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 653927..665519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UIB01_RS02950 (UIB01_02985) - 654545..656140 (-) 1596 WP_038656716.1 PleD family two-component system response regulator -
  UIB01_RS02955 (UIB01_02990) - 656358..657416 (+) 1059 WP_038656718.1 DUF2333 family protein -
  UIB01_RS02960 (UIB01_02995) pilR 657458..658795 (-) 1338 WP_038656721.1 sigma-54 dependent transcriptional regulator Regulator
  UIB01_RS02965 (UIB01_03000) pilS 658927..660519 (-) 1593 WP_038656723.1 PAS domain-containing sensor histidine kinase Regulator
  UIB01_RS02970 (UIB01_03005) - 660509..660742 (-) 234 WP_038656725.1 PP0621 family protein -
  UIB01_RS02975 (UIB01_03010) - 660863..661852 (-) 990 WP_038656727.1 outer membrane protein assembly factor BamD -
  UIB01_RS02980 (UIB01_03015) rluD 662058..663032 (+) 975 WP_038656729.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  UIB01_RS02985 (UIB01_03020) pgeF 663029..663763 (+) 735 WP_038656731.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 59026.06 Da        Isoelectric Point: 7.8546

>NTDB_id=120130 UIB01_RS02965 WP_038656723.1 658927..660519(-) (pilS) [Stutzerimonas decontaminans strain 19SMN4]
MGAENLTFFGDQGRRILRLYHLYRLTIGLALVLLISADLHNDLLQMSNPQLFQYGAWLYLILNILVAVLVQSPERDLPVL
GLALMDVILLSALFYFGGGTPSGIGNLLIVAVAIANILLRGRVGFFIAAVAATGLIYLTFYLSISRPEASSQYVQASALG
TLCFAAAFLVQGLARRLQFSETLARQRAEEVANLEALNALILQRMRTGIMVLDPQERVLLANQGALQLLGQDSLTGERLA
PRCPELLKALQQWRNNPTLRPQNLKAIPGGPTLQPSFAALQHGNKLDTLVFLEDTSQIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLHESDELDSADRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFVSEYRQGLSAQ
QTVHLETVGSSLQTRMDPNQLTQVLTNLVQNGLRYSGQQHERAQVWLRLFREEASDLPIVEVLDDGPGIAAEQLHNVFEP
FFTTESKGTGLGLYISRELCESNQARLDYRERPEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=120130 UIB01_RS02965 WP_038656723.1 658927..660519(-) (pilS) [Stutzerimonas decontaminans strain 19SMN4]
GTGGGCGCTGAAAACCTCACCTTCTTCGGCGATCAAGGGCGGCGAATCCTTCGCCTGTATCACCTCTATCGCCTGACCAT
CGGCCTGGCGCTGGTGTTACTGATCAGCGCCGACCTGCATAACGACCTGCTGCAGATGAGCAATCCGCAGCTGTTCCAAT
ATGGCGCCTGGCTCTACCTAATTCTTAATATCCTGGTCGCCGTGCTCGTTCAGAGCCCGGAGCGTGACCTGCCCGTCCTT
GGCCTTGCGCTAATGGACGTGATTCTGCTGTCGGCGCTGTTCTACTTCGGCGGCGGCACCCCAAGCGGTATCGGCAACCT
GCTGATCGTGGCCGTAGCCATCGCCAACATCTTGCTGCGCGGCAGAGTAGGTTTCTTCATCGCGGCAGTCGCGGCGACAG
GCCTGATCTATCTGACCTTCTATCTCAGCATCAGTCGCCCTGAAGCCAGCTCCCAGTACGTTCAAGCCAGCGCTCTCGGT
ACGCTATGCTTTGCTGCGGCGTTTCTGGTGCAAGGTCTGGCCCGGCGCCTGCAGTTCAGCGAAACATTGGCGCGGCAGCG
CGCAGAGGAGGTAGCCAATCTCGAGGCGCTTAACGCGTTGATCCTGCAGCGCATGCGCACCGGCATCATGGTTTTGGACC
CGCAAGAGCGCGTACTGCTCGCCAACCAAGGCGCATTGCAGTTGCTCGGCCAGGACTCACTGACTGGCGAACGCTTGGCG
CCGCGCTGCCCGGAGCTGCTCAAGGCCCTGCAGCAGTGGCGCAACAACCCTACCCTGCGCCCGCAGAATCTCAAGGCTAT
ACCAGGCGGACCGACGCTACAGCCAAGCTTCGCCGCGCTGCAGCATGGCAACAAACTGGACACGCTGGTATTCCTCGAAG
ACACCTCACAGATCGCGCAGAAGGCGCAGCAGCTCAAGCTCGCCTCCCTCGGTCGACTCACCGCCAGCATCGCCCATGAG
ATCCGCAATCCGTTGGGCGCCATCAGCCATGCTGCGCAGTTGCTCCATGAATCCGACGAGCTGGACAGCGCGGACCGCCG
TCTGGCGCAGATCATTCAGGATCATTCGCGGCGCATGAATCTGGTGATCGAAAACGTCCTGCAGCTCTCGCGGCGGCGTC
AGGCCGAGCCACAGCTACTGGATCTCAAGTACTGGCTGCACCGTTTTGTGAGCGAGTACCGTCAGGGGCTCAGCGCGCAG
CAGACGGTGCACCTAGAGACCGTCGGTAGTTCGCTGCAGACCCGCATGGACCCCAATCAGCTGACCCAGGTGCTCACCAA
CCTGGTGCAAAACGGCCTGCGCTACAGCGGCCAACAACACGAGCGAGCCCAGGTCTGGCTGCGGCTGTTTCGTGAGGAAG
CCAGCGACCTGCCCATCGTAGAAGTGCTCGACGACGGCCCGGGCATTGCCGCCGAGCAACTGCATAACGTCTTCGAGCCT
TTCTTCACCACCGAGAGCAAGGGCACCGGCCTGGGGCTGTATATCTCCCGCGAGCTGTGCGAGAGCAATCAGGCGCGCCT
GGATTATCGCGAACGACCCGAGGGCGGCAGCTGCTTCCGCATCGTCTTCGCTCACCCGCGCAAGCTGAGCTGA

Domains

Predicted by InterproScan.

PAS domain (PAS_8)

(202-245)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.038

100

0.66

Multiple sequence alignment