Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CF65_RS04390 Genome accession   NZ_CP007502
Coordinates   875967..876446 (+) Length   159 a.a.
NCBI ID   WP_005544986.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans HK1651     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 870967..881446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF65_RS04375 (CF65_01287) - 871720..872229 (-) 510 WP_012820881.1 IS3 family transposase -
  CF65_RS10410 (CF65_01289) - 872522..872861 (-) 340 Protein_862 transposase -
  CF65_RS04385 (CF65_01291) uvrA 872966..875797 (-) 2832 WP_025298238.1 excinuclease ABC subunit UvrA -
  CF65_RS04390 (CF65_01292) ssb 875967..876446 (+) 480 WP_005544986.1 single-stranded DNA-binding protein Machinery gene
  CF65_RS04395 (CF65_01294) - 876552..877406 (-) 855 WP_005544984.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  CF65_RS04400 (CF65_01295) aroB 877409..878497 (-) 1089 WP_005544982.1 3-dehydroquinate synthase -
  CF65_RS04405 (CF65_01296) aroK 878521..879048 (-) 528 WP_005555432.1 shikimate kinase AroK -
  CF65_RS04410 (CF65_01297) comE 879262..880671 (-) 1410 WP_005566816.1 type IV pilus secretin PilQ Machinery gene
  CF65_RS04415 (CF65_01298) - 880691..881083 (-) 393 WP_005544975.1 hypothetical protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17861.64 Da        Isoelectric Point: 5.3111

>NTDB_id=120055 CF65_RS04390 WP_005544986.1 875967..876446(+) (ssb) [Aggregatibacter actinomycetemcomitans HK1651]
MAGVNKVIIVGNLGNDPEVRTMPNGEAVANITVATSESWNDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRADRQSGGNYTPTSQPSYPNQQQSAPRSAPASKPAAEAPMDNFDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=120055 CF65_RS04390 WP_005544986.1 875967..876446(+) (ssb) [Aggregatibacter actinomycetemcomitans HK1651]
ATGGCTGGAGTAAATAAAGTGATTATTGTCGGTAATTTAGGTAACGATCCTGAAGTCCGCACCATGCCGAACGGCGAAGC
CGTCGCCAATATCACCGTTGCCACCAGTGAAAGCTGGAATGACAAAAACACCGGTGAACGCCGCGAAGTCACCGAATGGC
ACCGCATCGTATTTTATCGCCGCCAGGCGGAAGTGGCGGGGGAATACCTGCGTAAAGGGTCTAAAGTCTATGTCGAAGGA
CGCTTAAGAACCCGTAAATGGCAGGATCAAAACGGTCAAGATCGCTACACCACCGAAATCCAGGGCGACGTTTTACAAAT
GTTAGACAGCCGCGCCGATCGCCAATCCGGCGGAAACTACACACCGACATCCCAACCAAGTTATCCAAACCAACAACAAA
GCGCCCCACGCAGTGCGCCGGCAAGTAAACCTGCCGCCGAAGCGCCGATGGATAATTTTGATGATGATATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

70

100

0.792
  ssb Vibrio cholerae strain A1552

57.471

100

0.629
  ssb Neisseria meningitidis MC58

47.159

100

0.522
  ssb Neisseria gonorrhoeae MS11

47.159

100

0.522

Multiple sequence alignment