Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CL55_RS09530 Genome accession   NZ_CP007501
Coordinates   1862235..1862690 (-) Length   151 a.a.
NCBI ID   WP_046330869.1    Uniprot ID   -
Organism   Polynucleobacter duraquae strain MWH-MoK4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1857235..1867690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CL55_RS09515 (CL55_00018850) ilvA 1858879..1860399 (+) 1521 WP_046330866.1 threonine ammonia-lyase, biosynthetic -
  CL55_RS09520 (CL55_00018860) - 1860427..1861335 (+) 909 WP_046330867.1 5'-nucleotidase -
  CL55_RS09525 (CL55_00018870) queF 1861335..1862162 (+) 828 WP_046330868.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  CL55_RS09530 (CL55_00018880) ssb 1862235..1862690 (-) 456 WP_046330869.1 single-stranded DNA-binding protein Machinery gene
  CL55_RS09535 (CL55_00018890) - 1862771..1863955 (-) 1185 WP_046330870.1 MFS transporter -
  CL55_RS09540 (CL55_00018900) uvrA 1863993..1866881 (+) 2889 WP_046330871.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16276.13 Da        Isoelectric Point: 5.9393

>NTDB_id=120040 CL55_RS09530 WP_046330869.1 1862235..1862690(-) (ssb) [Polynucleobacter duraquae strain MWH-MoK4]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQSGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGSGDGGESYSRSKPVENSAPASSNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=120040 CL55_RS09530 WP_046330869.1 1862235..1862690(-) (ssb) [Polynucleobacter duraquae strain MWH-MoK4]
ATGGCTTCGGTAAATAAGGTCATCATCGTAGGTAACGTAGGACGTGATCCAGAAACGCGTTATATGCCAAGCGGCGACGC
AGTAACTAATATTTCAGTAGCGACATCGGATCGTTACAAAGATAAGCAGTCTGGCGAAATGAAAGAAACCACAGAATGGC
ACCGTGTTGCATTCTTTGGAAAACTTGCAGAGATCGCTGGTCAATATCTCAAAAAAGGTTCACAGGTTTATGTAGAAGGT
CGTTTACGCACACGTAAGTGGACTGATGCTAGTGGCCAAGAAAAATACTCCACTGAGATCGTTGCAGAAACAATGCAAAT
GCTGGGTGGCAAGCCAGTAGGTGGCAGTGGTGACGGTGGTGAAAGTTACAGCCGCTCAAAGCCGGTTGAGAACTCTGCGC
CAGCATCTTCTAATGCGGCATCCCTTGGCGCAATGGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.282

100

0.589
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.536
  ssb Glaesserella parasuis strain SC1401

45

100

0.536
  ssb Neisseria meningitidis MC58

45.455

100

0.53

Multiple sequence alignment