Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   NTHI723_RS03115 Genome accession   NZ_CP007472
Coordinates   654150..655271 (+) Length   373 a.a.
NCBI ID   WP_044364451.1    Uniprot ID   A0AAJ8WAC2
Organism   Haemophilus influenzae strain 723     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 649150..660271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTHI723_RS03100 (NTHI723_00626) leuC 649336..650745 (-) 1410 WP_044364448.1 3-isopropylmalate dehydratase large subunit -
  NTHI723_RS03105 (NTHI723_00627) leuB 650819..651895 (-) 1077 WP_044364449.1 3-isopropylmalate dehydrogenase -
  NTHI723_RS03110 (NTHI723_00628) leuA 652059..653606 (-) 1548 WP_044364450.1 2-isopropylmalate synthase -
  NTHI723_RS03115 (NTHI723_00629) dprA 654150..655271 (+) 1122 WP_044364451.1 DNA-processing protein DprA Machinery gene
  NTHI723_RS03120 (NTHI723_00630) yaaA 655325..656101 (+) 777 WP_044364452.1 peroxide stress protein YaaA -
  NTHI723_RS03125 (NTHI723_00631) - 656094..656675 (+) 582 WP_011272328.1 hypothetical protein -
  NTHI723_RS03130 (NTHI723_00632) pfkA 656771..657736 (+) 966 WP_011272327.1 6-phosphofructokinase -
  NTHI723_RS03135 (NTHI723_00633) smpB 657975..658460 (+) 486 WP_005647965.1 SsrA-binding protein SmpB -
  NTHI723_RS03140 (NTHI723_00634) fis 658561..658860 (-) 300 WP_005647967.1 DNA-binding transcriptional regulator Fis -
  NTHI723_RS03145 (NTHI723_00635) dusB 658854..659880 (-) 1027 Protein_637 tRNA dihydrouridine synthase DusB -

Sequence


Protein


Download         Length: 373 a.a.        Molecular weight: 41612.68 Da        Isoelectric Point: 6.4124

>NTDB_id=119759 NTHI723_RS03115 WP_044364451.1 654150..655271(+) (dprA) [Haemophilus influenzae strain 723]
MNDITYTLLRLMQVPKLGGVGIDKILSNITLNELLNYDDVAFRQMGWGAIQIRRWFKPEAKFIEPALAWSQKEGNHLVNY
FSPFYPFLLKQTASFPPLLFVKGNLTALSQRQMAMVGSRYCTTYGEYWAKHFATELSLAGFTITSGLALGIDGHCHQAVV
NIQGQTIAVLGSGLEQIYPSKHQRLSAQIIENNGALVSEFLPNQAPIAANFPRRNRIISGLSVGTLVVEATEKSGSLITA
RYALEQNREVFAVPGNIQNESSQGCHRLIKQGAMLVENAKDILETLYQHSIHSQTEIDFDQIAVPNYTPPPDPRRLVEAP
SHPKLYSRIGYTPVSIDDLAEEFNLSVDVLLVQLLDLELQDLIISENGLYKRV

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=119759 NTHI723_RS03115 WP_044364451.1 654150..655271(+) (dprA) [Haemophilus influenzae strain 723]
ATGAATGACATTACCTACACATTACTCCGTTTAATGCAAGTACCTAAACTTGGCGGTGTTGGCATTGATAAAATTTTGTC
CAATATTACCTTAAATGAATTACTTAACTATGATGATGTTGCTTTCCGACAAATGGGATGGGGAGCCATTCAAATTCGCC
GTTGGTTCAAACCTGAAGCAAAATTTATTGAGCCAGCACTTGCGTGGTCACAAAAAGAAGGAAATCATTTAGTAAATTAT
TTTTCCCCTTTTTATCCCTTTTTATTGAAACAGACCGCAAGTTTTCCGCCACTATTATTTGTAAAAGGAAATTTAACCGC
ACTTTCGCAACGCCAAATGGCAATGGTTGGTAGCCGTTATTGCACGACTTATGGAGAATATTGGGCAAAACATTTTGCAA
CAGAACTTTCATTAGCGGGTTTTACCATAACAAGCGGTTTAGCATTAGGAATTGATGGTCATTGTCATCAAGCTGTCGTC
AATATTCAAGGACAAACTATTGCGGTTTTAGGCAGTGGATTAGAACAAATCTATCCCTCTAAACATCAAAGATTATCGGC
ACAAATCATCGAAAATAATGGCGCATTAGTCTCTGAGTTCTTACCAAACCAAGCCCCCATTGCTGCTAATTTTCCACGTC
GAAATCGGATTATTAGTGGGCTTTCAGTCGGCACGCTTGTTGTTGAAGCCACCGAAAAAAGCGGATCACTTATTACTGCA
CGGTATGCGTTGGAACAAAACCGAGAGGTTTTTGCTGTGCCAGGCAATATTCAAAATGAATCAAGTCAAGGTTGTCATCG
CCTAATTAAACAAGGCGCAATGTTGGTAGAAAATGCAAAGGACATTTTGGAAACCCTCTACCAACATTCTATCCACAGCC
AAACTGAAATTGATTTTGACCAGATCGCCGTGCCTAATTACACGCCACCACCCGACCCTCGCCGATTAGTAGAAGCACCA
AGTCACCCGAAACTTTACTCACGTATTGGCTATACTCCTGTGAGCATTGATGATTTAGCTGAAGAATTTAATTTAAGTGT
CGATGTTTTACTTGTTCAATTGCTCGATCTTGAGCTACAAGATCTTATCATAAGTGAAAATGGCTTATATAAACGCGTTT
AA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Haemophilus influenzae Rd KW20

99.464

100

0.995

  dprA Glaesserella parasuis strain SC1401

52.011

93.298

0.485

  dprA Vibrio campbellii strain DS40M4

43.617

100

0.44

  dprA Vibrio cholerae strain A1552

43.288

97.855

0.424

  dprA Legionella pneumophila strain ERS1305867

40.634

93.029

0.378


Multiple sequence alignment