Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AH68_RS00555 Genome accession   NZ_CP007456
Coordinates   149189..150940 (+) Length   583 a.a.
NCBI ID   WP_039196662.1    Uniprot ID   A0A0A7I0C6
Organism   Bifidobacterium catenulatum PV20-2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 144189..155940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AH68_RS00530 (AH68_00545) - 144817..145731 (-) 915 WP_081995838.1 thiazole synthase -
  AH68_RS00535 (AH68_00550) thiF 145815..146528 (-) 714 WP_039196654.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  AH68_RS00540 (AH68_00555) thiS 146656..146850 (-) 195 WP_039196655.1 sulfur carrier protein ThiS -
  AH68_RS00545 (AH68_00560) - 147305..148270 (+) 966 WP_144245673.1 aldo/keto reductase -
  AH68_RS00550 (AH68_00565) - 148389..148883 (+) 495 WP_039196658.1 MarR family winged helix-turn-helix transcriptional regulator -
  AH68_RS00555 (AH68_00570) rcrP 149189..150940 (+) 1752 WP_039196662.1 ABC transporter ATP-binding protein Regulator
  AH68_RS00560 (AH68_00575) rcrQ 150955..152799 (+) 1845 WP_039196663.1 ABC transporter ATP-binding protein Regulator
  AH68_RS00565 (AH68_00580) - 153120..154259 (+) 1140 WP_039196665.1 ATP-binding protein -
  AH68_RS00570 (AH68_00585) - 154243..155424 (-) 1182 WP_052189114.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64390.49 Da        Isoelectric Point: 5.0988

>NTDB_id=119515 AH68_RS00555 WP_039196662.1 149189..150940(+) (rcrP) [Bifidobacterium catenulatum PV20-2]
MLRIVRYLSKAEIVQMLIALVSIVGQIWFDLTLPDYMADITQLVETPGSEMSDIWIAGGKMLLVSLGSVACAVVTGFIAA
RVGASFSQRLRSLEFKKVESFGPAEMNRFSTASLITRSTNDITQIQMFVTMGLMMLIKAPIMAVWAVCKIANKGLEWTFA
TGIAVAVLLAVISVIMSFVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEEYQEDKFTEANKELTETQLFANRSMAI
MMPLMNTVMNGLMLAVYWIGAYLIDAAEALDKLTTFSNMVVFSSYSIQVIMSFLLLSMVFVLWPRADVSAQRVLEVIDTD
PMVADGVKTAGKPGVEGEIEFRNVSFAYPDSRQAMLEGVNFTAKKGETVAFIGSTGSGKSSLINLVPRFYDATQGEVLVD
GVNVRDYTLKALRDKIGYVPQQSFLFKGTIASNVAYGDTERNDADVKTACEVAQATEFIDKKDKKYDSGIAQGGSNVSGG
QKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALEREAKDSTKLIVAQRIGTIMNADRIIVLDDGKVVGQGTHHE
LLDNCEVYRQIAESQLSEDELNR

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=119515 AH68_RS00555 WP_039196662.1 149189..150940(+) (rcrP) [Bifidobacterium catenulatum PV20-2]
ATGCTTCGCATTGTGCGATACCTCTCCAAAGCGGAGATAGTCCAGATGCTCATTGCACTGGTCAGCATCGTCGGTCAGAT
CTGGTTCGATCTGACGCTACCGGATTACATGGCCGACATCACGCAGCTCGTGGAAACGCCGGGCAGTGAAATGAGTGATA
TCTGGATAGCGGGCGGCAAAATGCTGCTCGTCTCGCTCGGATCGGTGGCGTGCGCGGTCGTCACCGGCTTCATCGCCGCG
CGCGTCGGCGCGTCATTCAGCCAACGTCTGCGCTCGCTCGAATTCAAGAAGGTGGAAAGCTTCGGACCGGCGGAAATGAA
CCGTTTCTCCACCGCATCGCTCATCACCCGCTCCACGAACGACATCACGCAGATCCAGATGTTCGTGACCATGGGGCTGA
TGATGCTGATCAAAGCGCCGATCATGGCCGTGTGGGCCGTGTGCAAAATCGCGAACAAAGGCCTTGAATGGACGTTCGCC
ACTGGCATCGCAGTAGCCGTGCTGCTGGCGGTGATCAGCGTGATCATGAGCTTTGTCATGCCGAAGTTCAAGGCCATGCA
GCGCCTGACCGACAATATCAACCTCGTGGCGCGCGAGAACCTCACTGGCCTGCGCGTGGTGCGCGCATACAACGCCGAGG
AGTACCAGGAAGACAAGTTCACCGAGGCCAACAAGGAACTTACCGAGACCCAGCTGTTCGCCAACCGCTCCATGGCCATC
ATGATGCCGTTGATGAACACCGTCATGAACGGTCTGATGCTGGCCGTCTACTGGATCGGCGCCTACCTCATCGACGCCGC
CGAAGCGCTCGACAAGCTCACCACCTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCATCCAGGTGATCATGAGCTTCC
TGCTGCTGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAGCGCGTGCTCGAAGTCATCGACACCGAT
CCGATGGTCGCCGACGGTGTGAAGACCGCCGGCAAGCCTGGCGTGGAAGGCGAAATCGAATTCCGCAACGTGAGCTTCGC
CTACCCCGATTCTCGTCAAGCAATGTTGGAAGGCGTCAATTTCACAGCCAAGAAGGGCGAAACGGTCGCGTTCATCGGCT
CCACAGGCTCCGGAAAATCATCTCTCATCAACCTCGTGCCGCGCTTCTACGATGCCACGCAAGGCGAGGTTCTCGTCGAC
GGCGTTAACGTGCGCGACTACACGCTCAAGGCGTTGCGTGACAAGATCGGCTATGTGCCGCAGCAGTCGTTCCTGTTCAA
GGGCACGATTGCCAGCAATGTCGCGTACGGAGATACGGAACGCAACGATGCCGACGTGAAGACGGCATGTGAAGTCGCAC
AGGCCACGGAATTCATCGACAAGAAAGACAAGAAATACGATTCCGGCATTGCGCAAGGTGGCTCCAACGTGTCGGGCGGG
CAGAAACAGCGCCTGTCGATCGCACGTGCCGTTTACCGTCATCCGGAAATCCTGATTTTCGACGACTCCTTCTCCGCGCT
TGATTTCAAGACCGATCGCGCCGTACGCGACGCGCTCGAACGGGAAGCGAAGGATTCCACGAAACTCATCGTCGCGCAGC
GCATCGGCACCATTATGAACGCCGACCGCATCATCGTGCTCGACGACGGCAAAGTCGTTGGCCAAGGTACGCACCACGAA
CTGCTCGACAACTGCGAAGTGTACCGGCAGATCGCCGAGTCGCAGTTGAGCGAAGACGAGTTGAATCGCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-293)

ABC transporter (ABC_tran)

(356-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7I0C6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50.336

100

0.515

Multiple sequence alignment