Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AH68_RS00560 Genome accession   NZ_CP007456
Coordinates   150955..152799 (+) Length   614 a.a.
NCBI ID   WP_039196663.1    Uniprot ID   A0A0A7I0E9
Organism   Bifidobacterium catenulatum PV20-2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 145955..157799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AH68_RS00540 (AH68_00555) thiS 146656..146850 (-) 195 WP_039196655.1 sulfur carrier protein ThiS -
  AH68_RS00545 (AH68_00560) - 147305..148270 (+) 966 WP_144245673.1 aldo/keto reductase -
  AH68_RS00550 (AH68_00565) - 148389..148883 (+) 495 WP_039196658.1 MarR family winged helix-turn-helix transcriptional regulator -
  AH68_RS00555 (AH68_00570) rcrP 149189..150940 (+) 1752 WP_039196662.1 ABC transporter ATP-binding protein Regulator
  AH68_RS00560 (AH68_00575) rcrQ 150955..152799 (+) 1845 WP_039196663.1 ABC transporter ATP-binding protein Regulator
  AH68_RS00565 (AH68_00580) - 153120..154259 (+) 1140 WP_039196665.1 ATP-binding protein -
  AH68_RS00570 (AH68_00585) - 154243..155424 (-) 1182 WP_052189114.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 67382.14 Da        Isoelectric Point: 5.9526

>NTDB_id=119516 AH68_RS00560 WP_039196663.1 150955..152799(+) (rcrQ) [Bifidobacterium catenulatum PV20-2]
MARGPMGRSRGPVEKPKDFGGVMSKLAKFCRHYIPVMIFALILGAAGTICQIVGPDKLKDMTNEITKGLPAMVHGRPVMH
SIDMDAVSHIAWLLVALYVGYALLSYLQSWLMANVTQRTAQELREAISKKINRLPLKYFDKVSYGDVLSRITNDVDAIGQ
TLGQSVGSLITSITLFVGALIMMFYNNVIMTLCAIGSALLGLVVMGVIMVASQKYFTRQQIALGDVNGHVEEMYTGHTVV
KAYCGEEDSIEQFEKYNDDLYVSGWKSQFLSGLMMPLMNFIGNFGYVVVCVVGAVLAMDGKIEFGVIVAFMMYIRLFTQP
LSQFAQAFQNLQRCAAASERVFGFLEEPELADESGKKALLGVGVDGKPQPVRGDVEFSHVQFGYDPDKTIIHDFSASVKA
GQKVAIVGPTGAGKTTMVNLLMRFYEISGGTISIDGVDTKSVPRWNVHDQFSMVLQDTWVFCGTVRENIAYSKPGVTDEQ
IVAACKAVGLHRYIMSLPNGYDTVLDDKASLSQGQKQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGR
TSFVIAHRLSTIRDADMILVMNGGDIVERGTHEELLAKNGFYADIYNSQFTLID

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=119516 AH68_RS00560 WP_039196663.1 150955..152799(+) (rcrQ) [Bifidobacterium catenulatum PV20-2]
ATGGCAAGAGGACCAATGGGACGCTCTCGCGGACCCGTGGAAAAACCGAAGGATTTCGGCGGTGTGATGAGCAAACTGGC
GAAATTCTGCCGTCACTACATTCCTGTGATGATTTTCGCCCTGATTCTGGGTGCGGCCGGCACGATCTGCCAGATTGTCG
GACCGGACAAGCTCAAAGACATGACCAACGAGATCACGAAGGGGCTGCCTGCCATGGTGCATGGCAGGCCGGTCATGCAC
TCGATCGATATGGATGCCGTCTCGCACATCGCATGGCTGCTTGTCGCGCTGTATGTTGGGTACGCGCTGCTGAGCTACCT
GCAGAGCTGGCTGATGGCCAACGTTACGCAGCGCACCGCGCAGGAGCTGCGTGAGGCGATCAGCAAGAAGATTAATCGCC
TGCCGCTCAAATATTTCGACAAGGTCAGCTACGGCGATGTGCTCAGCCGCATCACCAACGATGTGGACGCGATCGGCCAG
ACGCTCGGCCAGTCGGTCGGATCGCTGATCACTTCGATCACGCTGTTCGTCGGCGCGCTCATCATGATGTTCTACAACAA
CGTGATCATGACGCTGTGCGCCATCGGTTCCGCGTTGCTTGGCCTGGTGGTCATGGGCGTGATCATGGTCGCCTCGCAGA
AGTACTTCACCCGACAGCAGATCGCGTTGGGAGATGTGAACGGGCACGTTGAGGAAATGTACACCGGCCACACCGTGGTC
AAGGCGTACTGCGGCGAAGAGGACTCCATCGAACAGTTCGAGAAATACAACGATGATCTGTACGTCTCCGGCTGGAAGAG
CCAGTTCCTCTCCGGCCTGATGATGCCGCTCATGAACTTCATCGGCAACTTTGGTTACGTGGTCGTGTGCGTGGTCGGCG
CGGTGTTGGCCATGGACGGCAAAATCGAATTTGGCGTGATCGTGGCGTTCATGATGTACATTCGCCTGTTCACGCAACCG
CTTTCCCAGTTCGCACAGGCGTTCCAGAACCTGCAGCGCTGCGCTGCCGCTTCCGAACGCGTCTTCGGTTTCCTGGAAGA
GCCGGAACTGGCCGACGAATCCGGCAAGAAAGCACTGCTGGGTGTCGGTGTGGACGGCAAACCGCAACCGGTGCGTGGCG
ATGTGGAATTCAGCCACGTGCAGTTCGGCTACGACCCGGACAAGACGATCATCCACGACTTCTCTGCGTCGGTGAAGGCC
GGCCAGAAGGTGGCCATCGTCGGTCCGACCGGTGCCGGCAAGACCACGATGGTCAACCTGCTGATGCGGTTCTACGAGAT
TTCCGGCGGCACGATTTCGATCGACGGCGTCGACACCAAGTCGGTTCCGCGTTGGAATGTGCACGACCAGTTCTCGATGG
TATTGCAGGACACGTGGGTGTTCTGTGGAACGGTGCGTGAAAACATCGCATACTCGAAGCCGGGCGTTACCGACGAGCAG
ATTGTGGCCGCCTGCAAAGCCGTCGGTCTGCACCGCTACATCATGTCTCTGCCGAACGGCTACGACACCGTGCTCGACGA
CAAGGCTTCGCTTTCGCAAGGTCAGAAGCAGCTGCTGACAATCGCTCGCGCCATGGTTGAGGACGCGCCGATTCTGATTC
TCGACGAGGCCACGTCCTCCGTGGATACCCGTACCGAGGAGCTGATTCAGAAGGCGATGGACGCGCTGACGGTGGGTCGC
ACGAGCTTTGTGATCGCGCACCGGCTGTCCACCATCCGCGACGCCGACATGATTTTGGTGATGAACGGTGGCGACATTGT
GGAGCGCGGCACCCACGAAGAACTGCTCGCCAAGAACGGCTTCTACGCCGACATCTATAACAGCCAGTTCACGTTGATCG
ACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(38-321)

ABC transporter (ABC_tran)

(392-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7I0E9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.668

96.254

0.536

Multiple sequence alignment