Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   CH92_RS17515 Genome accession   NZ_CP007441
Coordinates   3844358..3845698 (+) Length   446 a.a.
NCBI ID   WP_025243065.1    Uniprot ID   W8RED1
Organism   Stutzerimonas stutzeri strain 28a24     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3839358..3850698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH92_RS17495 (CH92_17870) rluD 3840078..3841052 (-) 975 WP_025243061.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CH92_RS17500 (CH92_17875) - 3841328..3842329 (+) 1002 WP_025243062.1 outer membrane protein assembly factor BamD -
  CH92_RS17505 (CH92_17880) - 3842425..3842661 (+) 237 WP_025243063.1 PP0621 family protein -
  CH92_RS17510 (CH92_17885) pilS 3842651..3844243 (+) 1593 WP_025243064.1 ATP-binding protein Regulator
  CH92_RS17515 (CH92_17890) pilR 3844358..3845698 (+) 1341 WP_025243065.1 sigma-54 dependent transcriptional regulator Regulator
  CH92_RS17520 (CH92_17895) - 3845735..3846790 (-) 1056 WP_025243066.1 DUF2333 family protein -
  CH92_RS17525 (CH92_17900) - 3847006..3848619 (+) 1614 WP_025243067.1 PleD family two-component system response regulator -
  CH92_RS17530 (CH92_17905) - 3848668..3850632 (+) 1965 WP_025243068.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49979.56 Da        Isoelectric Point: 6.6971

>NTDB_id=119365 CH92_RS17515 WP_025243065.1 3844358..3845698(+) (pilR) [Stutzerimonas stutzeri strain 28a24]
MTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARECLAREHYDLCLTDMRLPDGCGLELVQFIQQQYPHLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLGRLRELVNTALRLRNPNPNELTVDSRLLGASPPMNVLRKQIGKLARSQAPV
YISGESGSGKELVARLIHEQGPRHERPFVPVNCGAIPSELMESEFFGHKKGSFTGAMEDKPGLFQAANGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRSVGGAKEVVVDVRILCATHKDLASEVAAGRFRQDLYYRLNVIELRVPPLRERREDIAQLSEV
MLRRLAQECGDTAARLHPEALAKLQNYRFPGNVRELENMLERAYTLCEGEEIKPSDLRLSDAPGMAENGEASLAQIDNLE
DHLEEVERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=119365 CH92_RS17515 WP_025243065.1 3844358..3845698(+) (pilR) [Stutzerimonas stutzeri strain 28a24]
ATGACTGCCCGCCAGAAAGCGCTGATCATCGATGACGAACCCGATATCCGGGAGCTCCTGGAGATCACCCTGGGACGCAT
GAAGCTGGACACCCGCAGCGCCCGCAACCTCAAGGAGGCTCGCGAGTGCCTGGCGCGCGAGCATTATGATCTGTGCCTGA
CCGACATGCGCCTGCCGGACGGTTGCGGATTGGAGCTGGTGCAGTTCATTCAGCAACAGTATCCGCACCTGCCGGTGGCA
ATGATCACCGCCTATGGCAGCCTCGACACCGCCATCGGCGCGCTCAAGGCTGGCGCTTTCGACTTTCTGACCAAGCCGGT
GGATCTCGGCCGGCTACGCGAGCTGGTCAACACCGCACTGCGACTGCGTAATCCGAACCCCAACGAGCTGACGGTCGATA
GTCGCTTGCTCGGCGCCTCGCCCCCGATGAACGTGCTGCGCAAGCAGATCGGCAAACTGGCGCGCAGCCAGGCCCCGGTA
TATATCAGCGGCGAATCCGGCAGCGGCAAGGAACTGGTGGCACGACTGATCCATGAGCAGGGCCCGCGTCATGAACGCCC
ATTCGTTCCGGTTAACTGTGGCGCGATCCCGTCGGAGCTGATGGAAAGCGAATTCTTCGGGCATAAAAAAGGCAGCTTCA
CCGGCGCCATGGAAGACAAACCGGGTCTGTTCCAGGCGGCGAACGGCGGCACGCTGTTTCTCGATGAAGTGGCCGACCTC
CCCCTGCCGATGCAAGTGAAGTTGCTGCGCGCGATTCAGGAAAAAGCCGTGCGTTCGGTCGGCGGGGCCAAGGAAGTCGT
GGTCGATGTACGGATTCTCTGCGCTACGCACAAGGATCTGGCCAGCGAAGTCGCCGCAGGGCGTTTCCGCCAGGATTTGT
ACTATCGTCTGAATGTCATCGAACTACGTGTGCCGCCCCTGCGCGAGCGTCGCGAAGACATCGCTCAGTTGTCCGAGGTC
ATGCTTCGTCGCCTCGCCCAGGAATGCGGCGACACGGCGGCACGACTGCATCCCGAAGCACTGGCGAAACTGCAGAATTA
TCGATTCCCTGGCAACGTGCGCGAGCTGGAAAATATGCTGGAGCGCGCCTACACGCTCTGTGAAGGCGAGGAAATCAAGC
CCAGCGATCTGCGCCTGTCCGACGCGCCGGGCATGGCCGAAAACGGCGAGGCGAGCCTTGCGCAGATCGACAATCTCGAA
GACCACCTCGAGGAGGTCGAGCGCAAGCTGATCATGCAGGCACTGGAAGAAACTCGCTGGAATCGCACGGCGGCCGCCCA
ACGGCTGGGGCTATCGTTCCGATCCATGCGCTATCGTTTGAAGAAGCTCGGGCTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W8RED1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

83.784

99.552

0.834
  pilR Acinetobacter baumannii strain A118

48.366

100

0.498
  luxO Vibrio cholerae strain A1552

38.876

99.776

0.388

Multiple sequence alignment