Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   CH92_RS17510 Genome accession   NZ_CP007441
Coordinates   3842651..3844243 (+) Length   530 a.a.
NCBI ID   WP_025243064.1    Uniprot ID   W8RXM4
Organism   Stutzerimonas stutzeri strain 28a24     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3837651..3849243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH92_RS17490 (CH92_17865) pgeF 3839347..3840081 (-) 735 WP_025243060.1 peptidoglycan editing factor PgeF -
  CH92_RS17495 (CH92_17870) rluD 3840078..3841052 (-) 975 WP_025243061.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CH92_RS17500 (CH92_17875) - 3841328..3842329 (+) 1002 WP_025243062.1 outer membrane protein assembly factor BamD -
  CH92_RS17505 (CH92_17880) - 3842425..3842661 (+) 237 WP_025243063.1 PP0621 family protein -
  CH92_RS17510 (CH92_17885) pilS 3842651..3844243 (+) 1593 WP_025243064.1 ATP-binding protein Regulator
  CH92_RS17515 (CH92_17890) pilR 3844358..3845698 (+) 1341 WP_025243065.1 sigma-54 dependent transcriptional regulator Regulator
  CH92_RS17520 (CH92_17895) - 3845735..3846790 (-) 1056 WP_025243066.1 DUF2333 family protein -
  CH92_RS17525 (CH92_17900) - 3847006..3848619 (+) 1614 WP_025243067.1 PleD family two-component system response regulator -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58999.20 Da        Isoelectric Point: 8.4721

>NTDB_id=119364 CH92_RS17510 WP_025243064.1 3842651..3844243(+) (pilS) [Stutzerimonas stutzeri strain 28a24]
MGTERLTFLGLQGRRILRLYHLYRVAIGLVLVLLISSDLHNDLMRMINPAAFHHGAWLYLILNILFAVLLQNPKRELPVL
ALALLDVTLLAALFYFAGGTPSGIGNLLIVAVAIANILLHGRIGFFIAAVAATGLIYLTFYLSVSDTAASSQYVQAAALG
TLCFAAALLVQGLTRRLQVSETLARQRAEEVANLEALNAQILQRMRTGIIVLDPQERVLLANQGALELLAQQSLTGERLA
PRCPELIRALQQWRDNPTLRPRSFKATPDGATLQPSFAALQHGVKQDTLVFLEDTSQIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEVLDAGDLRLTQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWVHRFASEFRESLPPG
QRIHVETRGSLLQTRMDPNQLIQVLTNLVQNGLRYSGQKHGQAQVWLQVFRDETSDLPTLEVLDDGPGVPPEQVQNIFEP
FFTTENKGTGLGLYISRELCESNQARLDYRERDEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=119364 CH92_RS17510 WP_025243064.1 3842651..3844243(+) (pilS) [Stutzerimonas stutzeri strain 28a24]
GTGGGAACTGAGCGCCTGACATTTCTCGGCCTCCAGGGCCGGCGAATCCTTCGGCTCTACCATCTTTATCGCGTCGCAAT
CGGCCTCGTGTTGGTCCTGCTCATCAGCAGCGACCTGCACAACGACCTGATGCGCATGATCAACCCGGCGGCGTTTCACC
ACGGCGCCTGGCTCTATCTGATTCTCAACATCCTTTTCGCCGTGCTGCTGCAGAACCCGAAGCGGGAGCTACCGGTTCTG
GCGCTCGCGCTGCTGGACGTCACCCTGCTCGCGGCGTTGTTCTATTTCGCCGGTGGCACACCCAGCGGGATTGGCAACCT
GCTGATTGTCGCCGTCGCCATCGCTAACATTCTGCTGCACGGGCGCATTGGCTTTTTCATCGCCGCAGTTGCCGCGACCG
GCCTCATCTACCTGACGTTCTACCTCAGCGTCAGCGACACCGCGGCCAGCAGTCAGTACGTCCAGGCCGCTGCGCTGGGC
ACACTATGCTTTGCCGCCGCGCTGCTGGTGCAAGGCCTGACCCGACGGCTGCAGGTCAGCGAAACGCTTGCCCGCCAACG
CGCCGAGGAAGTCGCCAATCTCGAAGCGCTGAATGCCCAGATCCTGCAACGTATGCGCACCGGGATCATCGTCCTCGATC
CGCAGGAACGCGTGCTGCTTGCCAACCAAGGTGCGCTGGAGCTGCTCGCTCAACAATCATTGACCGGCGAACGCCTAGCC
CCTCGCTGCCCCGAGCTGATCAGAGCGCTTCAGCAATGGCGCGACAACCCCACCCTGCGCCCGCGCAGCTTCAAGGCAAC
CCCCGACGGCGCCACACTGCAGCCAAGCTTCGCCGCTCTGCAGCATGGCGTGAAGCAGGACACCTTGGTTTTTCTTGAAG
ACACTTCGCAAATCGCACAGAAGGCCCAGCAGCTCAAGCTCGCCTCGCTCGGTCGATTAACCGCCAGCATCGCCCATGAG
ATTCGCAATCCGCTCGGCGCGATCAGCCATGCAGCGCAGCTGCTACAGGAATCCGAAGTGCTGGATGCCGGGGACCTGCG
GCTGACGCAGATCATTCAGGACCATTCGCGACGTATGAACCTGGTCATCGAGAATGTGCTTCAGCTGTCACGCCGGCGAC
AGGCCGAGCCGCAGTTGCTGGACCTGAAATACTGGGTACATCGATTCGCCAGTGAATTTCGTGAGTCACTGCCGCCTGGC
CAGCGCATACATGTGGAAACCCGAGGCAGTTTGCTACAAACCCGCATGGACCCAAACCAGCTGATCCAGGTGCTGACCAA
TCTGGTACAGAACGGCCTGCGCTACAGTGGCCAGAAACATGGCCAAGCGCAGGTTTGGCTGCAGGTATTCCGCGATGAGA
CCAGCGATTTGCCGACGCTCGAAGTCCTCGACGATGGTCCGGGCGTGCCGCCCGAGCAGGTGCAGAATATTTTCGAGCCG
TTCTTCACGACAGAGAACAAGGGCACGGGCTTGGGCCTATATATTTCCCGAGAGCTTTGCGAAAGCAATCAAGCCCGTCT
GGACTACCGTGAACGAGATGAAGGCGGCAGCTGTTTTCGCATCGTTTTCGCGCATCCGCGTAAGCTGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W8RXM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

64.906

100

0.649

Multiple sequence alignment